Notebook with segmentation tutorial

Setting Up Your Modeling Environment

Requirements:

Anaconda Python 3 installation.

Anaconda Installation

You can find instructions for anaconda installation here:

Updating Conda Environment and Installing networkx

Start a terminal. You can find instructions for opening terminals here:

Run the following commands. They will update your python environment and install Pyemd.

conda update --all

Clone or Download this Repository

Click on the Clone or download button and clone it to a repository or download it as a zip file.

If you want help cloning the repository and don't know how to do it let me know. Otherwise, simply download the files and unpack them on a folder in your computer.

Running the Jupyter Notebooks

Open a terminal (see above).
Navigate to the folder where you unzipped the repository. Here are some quick tutorials to use the terminal:

Run the following command:

jupyter notebook --NotebookApp.iopub_data_rate_limit=10000000000

The jupyter notebook command is normally sufficient, but the visualizations I'm including have a data rate limit to high for the defaults. There is a way of fixing this permanently, but you need to mess up with configuration files. More here:

Open the notebook. Launching jupyter should open the dashboard in your folder. Something that looks like this:

Click on the notebook you want to open.

Run all cells or the cells you want. For more information about running cells please see:

Running Jupyter Code

Jupyter Notebook Documentation:

More information about the Jupyter notebook can be found here:

Jupyter notebook documentation