/evangelist

Evaluation on Genome List

Primary LanguageJupyter Notebook

Evaluation on genome list (EVANGELIST)

This tool provides set of components (dna_puller, gnuplot_generator) and set of jupyter notebooks to perform various evaluation upon list of genomes.

dna_puller

This component is able to download and analyze data in automate way from Ensembl database

gnuplot_generator

This component is able to generate definiton file for gnuplot tool.

Jupyter notebook for Ensembl

This notebook provides brief introduction how to use dna_puller and gnuplot_generator to perform sliding window analysis and create set of charts for given species

Jupyter notebook for NCBI

This notebook provides brief introduction how to download data fron NCBI database using csv file from genome list of NCBI, sliding_window parser and gnuplot_generator to perfom same analysis and charts like in Enseml one.