Pinned Repositories
avian-influenza
Consensus sequences for U.S. H5N1 clade 2.3.4.4b
bjorn
Freyja
Depth-weighted De-Mixing
HCoV-19-Genomics
SARS-CoV-2 genomics
ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
paper_2021_early-b117-usa
SARS-CoV-2_WasteWater_San-Diego
west-nile-genomics-wnv4k
West Nile virus genomic data produced as part of the WestNile 4K Project
zika-epidemiology
Zika Epidemiology - Case Numbers
zika-genomics
Zika virus genomics
Andersen Laboratory @ Scripps Research's Repositories
andersen-lab/ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
andersen-lab/Freyja
Depth-weighted De-Mixing
andersen-lab/avian-influenza
Consensus sequences for U.S. H5N1 clade 2.3.4.4b
andersen-lab/bjorn
andersen-lab/HCoV-19-Genomics
SARS-CoV-2 genomics
andersen-lab/SARS-CoV-2_WasteWater_San-Diego
andersen-lab/Freyja-data
Previous versions of Freyja barcodes and metadata files
andersen-lab/SARS-CoV-2_SGTF_San-Diego
andersen-lab/Freyja-SRA
andersen-lab/SARS-CoV-2_Evolution
andersen-lab/ebola-drc-epidemiology
Repo for epidemiological data for the ongoing Ebola outbreak in the DRC
andersen-lab/project_2023_SARS-CoV-2_Connectivity
andersen-lab/Cryptic-Variants
andersen-lab/HCoV-19-Genomics-Nextstrain
Repo for local NextStrain build
andersen-lab/hMPXV-1_Nigeria
andersen-lab/paper_2020_new-orleans-hcov-genomics
andersen-lab/SARS-CoV-1_Evolution
andersen-lab/west-nile-genomics-wnv4k
West Nile virus genomic data produced as part of the WestNile 4K Project
andersen-lab/bjorn_utils
Key utils for sequence processing moved to a new home from bjorn
andersen-lab/MPX_WasteWater_San-Diego
andersen-lab/emails_mcneil
Emails between Dr. Kristian Andersen and Mr. Donald McNeil
andersen-lab/MixAmp
Amplicon read simulator
andersen-lab/MPXV_zoonotic_transmission_West_Africa
andersen-lab/NHP-survival-analysis
andersen-lab/outbreak.api
The data API server for outbreak.info
andersen-lab/outbreak.info
During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.
andersen-lab/paper_2022_jordan-sars2-phylogenetics
andersen-lab/paper_2022_zika-functional-evolution
andersen-lab/SARS2_doc_article_translations
andersen-lab/SARS2_tianyancha_screenshots