Andersen Laboratory @ Scripps Research

La Jolla, CA

Pinned Repositories

avian-influenza
Consensus sequences for U.S. H5N1 clade 2.3.4.4b
Language:Shell28 13 27
bjorn
Language:Python21 10 224
Freyja
Depth-weighted De-Mixing
Language:HTML106 13 14831
Freyja-barcodes
Language:HTML6 4 30
HCoV-19-Genomics
SARS-CoV-2 genomics
15 3 75
ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
Language:C++119 13 13042
paper_2021_early-b117-usa
Language:R6 6 11
SARS-CoV-2_WasteWater_San-Diego
Language:Python12 15 73
west-nile-genomics-wnv4k
West Nile virus genomic data produced as part of the WestNile 4K Project
1 4 03
zika-epidemiology
Zika Epidemiology - Case Numbers
Language:Python7 3 14

Andersen Laboratory @ Scripps Research's Repositories

andersen-lab/ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
Language:C++119 13 13042
andersen-lab/Freyja
Depth-weighted De-Mixing
Language:HTML106 13 14831
andersen-lab/avian-influenza
Consensus sequences for U.S. H5N1 clade 2.3.4.4b
Language:Shell28 13 27
andersen-lab/bjorn
Language:Python21 10 224
andersen-lab/HCoV-19-Genomics
SARS-CoV-2 genomics
15 3 75
andersen-lab/SARS-CoV-2_WasteWater_San-Diego
Language:Python12 15 73
andersen-lab/Freyja-barcodes
Language:HTML6 4 30
andersen-lab/Freyja-data
Previous versions of Freyja barcodes and metadata files
Language:Python4 7 10
andersen-lab/Freyja-SRA
Language:Python4 3 02
andersen-lab/SARS-CoV-2_SGTF_San-Diego
4 6 00
andersen-lab/SARS-CoV-2_Evolution
3 4 01
andersen-lab/project_2023_SARS-CoV-2_Connectivity
Language:Jupyter Notebook2 5 0
andersen-lab/Cryptic-Variants
Language:Nextflow1 1 10
andersen-lab/hMPXV-1_Nigeria
Language:Jupyter Notebook1 0 0
andersen-lab/MixAmp
Amplicon read simulator
Language:Python1 1 0
andersen-lab/SARS-CoV-1_Evolution
Language:R1 5 00
andersen-lab/bjorn_utils
Key utils for sequence processing moved to a new home from bjorn
Language:Python0 5 180
andersen-lab/MPX_WasteWater_San-Diego
0 6 00
andersen-lab/emails_mcneil
Emails between Dr. Kristian Andersen and Mr. Donald McNeil
5 0
andersen-lab/freyja-cryptic
Language:Python
andersen-lab/Freyja-nf
nextflow pipeline for NICD wastewater surveillance
Language:Python0 0
andersen-lab/lone_pine
Sequencing dashboard for San Diego County
Language:Jupyter Notebook4 11
andersen-lab/Mpox_West_Africa
Language:Jupyter Notebook
andersen-lab/MPXV_zoonotic_transmission_West_Africa
Language:Jupyter Notebook0 0
andersen-lab/outbreak.api
The data API server for outbreak.info
Language:HTML1 0
andersen-lab/outbreak.info
During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.
Language:Vue1 0
andersen-lab/paper_2022_jordan-sars2-phylogenetics
Language:Jupyter Notebook6 11
andersen-lab/paper_2022_zika-functional-evolution
Language:Python7 0
andersen-lab/SARS2_doc_article_translations
6 01
andersen-lab/SARS2_tianyancha_screenshots
6 0