andim

Quantitative Immunology, Biological Physics

University College LondonLondon

Pinned Repositories

andim.github.io
Source for personal homepage
Language:CSS1 3 01
easyleed
Software for Low Energy Electron Diffraction I(E)-spectra analysis
Language:Python12 4 194
evolimmune
Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"
Language:Jupyter Notebook8 3 11
mise
public mise ( http://en.wikipedia.org/wiki/Mise_en_place )
Language:Shell2 3 00
noisyopt
Python library for optimizing noisy functions.
Language:Python87 6 2115
paper-tcellimprint
Source code accompanying the paper "Early life imprints the hierarchy of T cell clone sizes"
Language:Jupyter Notebook4 3 00
projgrad
Projected gradient optimization in python
Language:Python14 4 05
pydiver
Ecological diversity analysis in python
Language:Jupyter Notebook2 2 00
pyrepseq
Python library for immune repertoire analysis
Language:Python15 8 194
scipydirect
Python wrapper to the DIRECT global optimization algorithm with scipy.optimize compatible call syntax
Language:Fortran28 3 97

andim's Repositories

andim/noisyopt
Python library for optimizing noisy functions.
Language:Python87 6 2115
andim/scipydirect
Python wrapper to the DIRECT global optimization algorithm with scipy.optimize compatible call syntax
Language:Fortran28 3 97
andim/pyrepseq
Python library for immune repertoire analysis
Language:Python15 8 194
andim/projgrad
Projected gradient optimization in python
Language:Python14 4 05
andim/easyleed
Software for Low Energy Electron Diffraction I(E)-spectra analysis
Language:Python12 4 194
andim/evolimmune
Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"
Language:Jupyter Notebook8 3 11
andim/paper-tcellimprint
Source code accompanying the paper "Early life imprints the hierarchy of T cell clone sizes"
Language:Jupyter Notebook4 3 00
andim/mise
public mise ( http://en.wikipedia.org/wiki/Mise_en_place )
Language:Shell2 3 00
andim/pydiver
Ecological diversity analysis in python
Language:Jupyter Notebook2 2 00
andim/andim.github.io
Source for personal homepage
Language:CSS1 3 01
andim/optimmune
Source code accompanying the paper "How a well-adapted immune system is organized"
Language:Python1 4 10
andim/paper_coincidences
Source code accompanying the paper "Measures of epitope binding degeneracy from T cell receptor repertoires "
Language:Jupyter Notebook1 2 0
andim/peptidome
Self/non-self discrimination as a statistical problem
Language:Jupyter Notebook1 3 00
andim/2024_inim0004
Course on Mathematical Modelling in Biomedicine at UCL
Language:Jupyter Notebook2 0
andim/crispr_repertoires
Source code associated with the paper 'A scaling law in CRISPR repertoire sizes arises from avoidance of autoimmunity'
Language:Jupyter Notebook3 0
andim/International-COVID-IFR
Age-specific mortality and immunity patterns of SARS-CoV-2 https://www.nature.com/articles/s41586-020-2918-0
Language:R2 0
andim/matplotlib
matplotlib: plotting with Python
Language:Python3 0
andim/OLGA
Compute generation probabilities of CDR3 amino acid and nucleotide sequences
Language:Python2 0
andim/paper-bayesimmune
Source code accompanying the paper "How a well-adapting immune system remembers"
Language:Python2 0
andim/paper-tcellexp
Source code accompanying the paper "Regulation of T cell expansion by antigen presentation dynamics "
Language:Python3 0
andim/pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
Language:Jupyter Notebook3 0
andim/pyneqsys
Solve symbolically defined systems of non-linear equations numerically.
Language:Python3 0
andim/pysnippets
Python snippets and benchmarks
Language:Jupyter Notebook3 0
andim/scipy
Scipy library main repository
Language:Python3 0
andim/scipy.org
Scipy.org web site source code
Language:Python3 0
andim/shablona
A template for small scientific python projects
Language:Jupyter Notebook3 0
andim/SONIA
Infer selection pressures on features of amino acid CDR3 sequences.
Language:Python2 0
andim/tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
Language:Python3 0
andim/transitions-paper
Source code accompanying the paper "Transitions in optimal adaptive strategies for populations in fluctuating environments"
Language:Jupyter Notebook3 0