andrese52

2013-khmer-counting

Paper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"

andrese52

Config files for my GitHub profile.

andrese52-academic

Basecalling-comparison

A comparison of different Oxford Nanopore basecallers

Bash-Oneliner

Bash Oneliner learning station. This blog will focus on bash commands for parsing biological data, which are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!

diamondsingularity

Example of Singularity container

EDNAtran

metagenomics-workshop

Metagenomics Workshop Overview

NanoSim

Nanopore sequence read simulator

epp_workshop

andrese52/metagenomics-workshop

Metagenomics Workshop Overview

andrese52/2013-khmer-counting

Paper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"

andrese52/andrese52

Config files for my GitHub profile.

andrese52/andrese52-academic

andrese52/Basecalling-comparison

A comparison of different Oxford Nanopore basecallers

andrese52/Bash-Oneliner

Bash Oneliner learning station. This blog will focus on bash commands for parsing biological data, which are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!

andrese52/bfg-repo-cleaner

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

andrese52/diamondsingularity

Example of Singularity container

andrese52/EDNAtran

andrese52/CAMISIM

CAMISIM: Simulating metagenomes and microbial communities

andrese52/docker-diamond

Docker file to install diamond and use it

andrese52/epp_workshop_web

andrese52/introduction_to_ml_with_python

Notebooks and code for the book "Introduction to Machine Learning with Python"

andrese52/khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

andrese52/main

andrese52/markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

andrese52/meghna-hugo

Meghna Hugo Template

andrese52/nimffab.io

andrese52/oneliners

Useful bash one-liners for bioinformatics.

andrese52/rstudio

customized rstudio in docker

andrese52/SOAPdenovo2

Next generation sequencing reads de novo assembler.

andrese52/startbootstrap-sb-admin-2

A free, open source, Bootstrap admin theme created by Start Bootstrap

andrese52/Training_datasets_scripting

This is a set of basic datasets for a bioinformatics workshop organized in the Entomology and Plant Pathology Department at Oklahoma State University