Pinned Repositories
amylo-local
Code for local and hierarchical fitting of amyloid aggregation data
andrewcboardman.github.io
My website!
apta_ml
Machine learning for SELEX improvement
apta_pp
preprocessing of aptamer data
aptamers
aptamer binding part III project
droplets
EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
gene_lists
List of gene lists for genomic analyses.
gnomad_gpcrs
gpcr-constraint-mapping
Mapping patterns of mutational constraint in GPCRs
andrewcboardman's Repositories
andrewcboardman/amylo-local
Code for local and hierarchical fitting of amyloid aggregation data
andrewcboardman/andrewcboardman.github.io
My website!
andrewcboardman/apta_ml
Machine learning for SELEX improvement
andrewcboardman/apta_pp
preprocessing of aptamer data
andrewcboardman/aptamers
aptamer binding part III project
andrewcboardman/droplets
andrewcboardman/EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
andrewcboardman/gene_lists
List of gene lists for genomic analyses.
andrewcboardman/gnomad_gpcrs
andrewcboardman/gpcr-constraint-mapping
Mapping patterns of mutational constraint in GPCRs
andrewcboardman/gpcr-res-db
A script for scraping GPCRdb and associated data in a useful format for collecting residue-level information about GPCRs
andrewcboardman/gpcr-res-scores
andrewcboardman/gpcr_missense_constraint
andrewcboardman/gpcr_tree_mapper
andrewcboardman/maxent_decay
andrewcboardman/ortho-cha
andrewcboardman/ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
andrewcboardman/pyGEMME
andrewcboardman/rosetta_ddg
andrewcboardman/skRMD
A scikit-learn like implementation of the Random Matrix Discrimant classifier (see Lee et al. 2019)
andrewcboardman/zika_dengue