Pinned Repositories
Ames_ToxBenchmark
Dataset for training the Ames test from tox_benchmark_N6512_name.sdf
chembrain
Learn chemistry through tactile play. Build intuition for molecules and chemistry by drawing and playing interactive d3.js visualizations in your browser.
chemminedb
ChemmineDB: A web based chemical compound structure and screening database
DrugBank
Work with Databases from DrugBank.ca
FDA_Pesticide_Glossary
Chemical mining of pesticide glossary released by the FDA
PubChemFingerPrints
PubChem fingerprint files for fast searching using simsearch of openbabel
PubChemMapReduce
Clustering of PubChem to DrugBank in a Map Reduce process
query_wet_news
Looking through the common crawl archives news entries
TesseractOCR
Full text extraction using the Open Source Tesseract OCR software https://code.google.com/p/tesseract-ocr/ and imagemagick
ThePesticideFiles
Corpus of bound books on "Pesticides"
andrewdefries's Repositories
andrewdefries/TesseractOCR
Full text extraction using the Open Source Tesseract OCR software https://code.google.com/p/tesseract-ocr/ and imagemagick
andrewdefries/ThePesticideFiles
Corpus of bound books on "Pesticides"
andrewdefries/chembrain
Learn chemistry through tactile play. Build intuition for molecules and chemistry by drawing and playing interactive d3.js visualizations in your browser.
andrewdefries/DrugBank
Work with Databases from DrugBank.ca
andrewdefries/FDA_Pesticide_Glossary
Chemical mining of pesticide glossary released by the FDA
andrewdefries/PubChemFingerPrints
PubChem fingerprint files for fast searching using simsearch of openbabel
andrewdefries/PubChemMapReduce
Clustering of PubChem to DrugBank in a Map Reduce process
andrewdefries/query_wet_news
Looking through the common crawl archives news entries
andrewdefries/andrewdefries.github.io
github.io
andrewdefries/AplasticAnemia
Natural Language Processing analysis of published literature on the search term 'aplastic anemia'
andrewdefries/CA_Pesticides_1991_2011
A means to show the Chemical space of pesticides reported used in CA from 1991-2011
andrewdefries/ChemicalEyes
Chemical Vision for non-chemists
andrewdefries/commercejs-nextjs-demo-store
andrewdefries/common_crawl_wet2_chernoff_world
andrewdefries/CorpusReaders
Help for speed readers
andrewdefries/fmcsR-the-SDFset
Using fmcsR and ChemmineR to group cluster compounds based on Atom Pair similarity and make standard MCS reports of each compound cluster
andrewdefries/gatsby-starter-ghost
andrewdefries/hwriter4ChemmineR
hwriter tools to print tables from ChemmineR
andrewdefries/LifeChemicalsAnnotation
Annotation of the Life Chemical stock compound library using several cheminformatic and full text mining approaches
andrewdefries/PubChem2InChI
Extracting minimal fields from the Pubchem dataset using sdfstream function of ChemmineR
andrewdefries/PubChemROF
PubChem Rule of Five Chemical Space Analysis
andrewdefries/public.conflabs.com
Web scrape archive and data clean of public.conflabs.com
andrewdefries/RCircos4ChemmineR
Mapping nearest neighbor relationships of compounds onto a circos graph
andrewdefries/ReadABigBook
Text processing tricks to read selections of the PubMed Central Open Corpus
andrewdefries/SDF2PDF
Scripts to convert SDFset object into PDF using open babel, mol2chemfig and Latex
andrewdefries/T3DB
Toxin, Toxin-Target Database
andrewdefries/ToxCast
Repo documenting presentation at ToxCast Data Summit
andrewdefries/UCR
University of California Dissertation
andrewdefries/unLATCA
andrewdefries/YAWYE
You Are What You Eat