andrewejaffe/panelcn.mops

CNV detection tool for targeted NGS panel data

panelcn.MOPS - CNV detection tool for targeted NGS panel data

The panelcn.mops R package is based on the cn.mops package and allows to detect copy number variations (CNVs) from targeted NGS panel data. Please visit http://www.bioinf.jku.at/software/panelcnmops/index.html for additional information.

Installation:

1. install cn.mops from bioconductor.org:

   ## try http:// if https:// URLs are not supported  
   source("https://bioconductor.org/biocLite.R")  
   biocLite("cn.mops")  
   

2. install panelcn.mops from github e.g. like this:

   install.packages("devtools")  
   devtools::install_github("bioinf-jku/panelcn.mops")