andrewelamb/kubernetes-deployments

Kubernetes deployments on ibc EKS cluster

kubernetes-deployments

Kubernetes deployments on ibc EKS cluster. To set up the dependencies, we leverage anaconda:

conda env create -f environment.yml

Deployment

• Deploying cronjobs on kubernetes: https://v1-21.docs.kubernetes.io/docs/tasks/job/automated-tasks-with-cron-jobs/

  kubectl get svc
  kubectl create secret generic tyu-syn-pat --from-literal=synapse_auth_token=....
  kubectl apply -f projectlive_nf_cronjob.yaml
  kubectl get cronjob projectlive-nf
  kubectl get jobs --watch
  kubectl get pods --selector=job-name=projectlive-nf-27164915
  kubectl logs projectlive-nf-27164915-6h75l
  kubectl delete cronjob projectlive-nf
  kubectl delete job nlp-participant-dashboard-27171840
  

• Delete all pending pods

kubectl get pods | grep Pending | awk '{print $1}' | xargs kubectl delete pod

Shiny proxy

https://medium.com/@rohitsrmuniv/using-shinyproxy-with-kubernetes-eba5bd06230