Pinned Repositories
ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
ACCESS_SV_local
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
biopython
Official git repository for Biopython (converted from CVS)
cancer-genomics-workflow
MGI's CWL Cancer Pipelines.
CNApp
CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-friendly interface. The software uses segmented data from either aCGH, SNP-array, whole-exome sequencing or whole-genome sequencing to assess sample profiles and CNA levels, establishing associations with molecular and clinical features. CNApp has three main sections: Re-Seg & Score, Region profile and Classifier model
computer-science-flash-cards
Mini website for testing both general CS knowledge and enforce coding practice and common algorithm/data structure memorization.
concept-to-clinic
ALCF Concept to Clinic Challenge
covidclinicaldata
Coronavirus Disease 2019 (COVID-19) Clinical Data Repository
sv_annotator
andurill's Repositories
andurill/cufflinks
andurill/kallisto
Near-optimal RNA-Seq quantification
andurill/scikit-learn
scikit-learn: machine learning in Python
andurill/tensorflow
Computation using data flow graphs for scalable machine learning
andurill/WholeCell
Mycoplasma genitalium whole-cell model