andygxzeng

Espresso

Error Correction by Sequence Context Signature Integration

AMLHierarchies

Analysis notebooks and data for AML hierarchies paper

b_development_map

B cell Development Map

BoneMarrowMap

A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations

BoneMarrowMap_Extras

Tutorial notebooks, external signatures, and supporting code for the BoneMarrowMap package and paper.

carms_paper

Analyzing publicly available data on the Canadian Residency Match

HSC_Pseudotime

Pseudotime analysis using scRNA-seq and sc immunoflourescence data from human HSCs

MitoSeek

Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing

pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

BALL-Single-Cell-Landscape

andygxzeng/BoneMarrowMap

A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations

andygxzeng/AMLHierarchies

Analysis notebooks and data for AML hierarchies paper

andygxzeng/BoneMarrowMap_Extras

Tutorial notebooks, external signatures, and supporting code for the BoneMarrowMap package and paper.

andygxzeng/HSC_Pseudotime

Pseudotime analysis using scRNA-seq and sc immunoflourescence data from human HSCs

andygxzeng/MitoSeek

Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing

andygxzeng/b_development_map

B cell Development Map

andygxzeng/carms_paper

Analyzing publicly available data on the Canadian Residency Match

andygxzeng/pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.