andynankai's Stars
hpcaitech/ColossalAI
Making large AI models cheaper, faster and more accessible
vllm-project/vllm
A high-throughput and memory-efficient inference and serving engine for LLMs
volcano-sh/volcano
A Cloud Native Batch System (Project under CNCF)
thunlp/PLMpapers
Must-read Papers on pre-trained language models.
facebookresearch/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
RosettaCommons/RFdiffusion
Code for running RFdiffusion
VKSRC/Github-Monitor
Github Sensitive Information Leakage Monitor(Github信息泄漏监控系统)
mlrun/mlrun
MLRun is an open source MLOps platform for quickly building and managing continuous ML applications across their lifecycle. MLRun integrates into your development and CI/CD environment and automates the delivery of production data, ML pipelines, and online applications.
e3nn/e3nn
A modular framework for neural networks with Euclidean symmetry
google-deepmind/alphamissense
RosettaCommons/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
dptech-corp/Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.
uw-ipd/RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
RosettaCommons/protein_generator
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
LirongWu/MAPE-PPI
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
reiz/nginx_proxy
NGinx forward proxy
atomicarchitects/equiformer_v2
[ICLR 2024] EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representations
uw-ipd/RoseTTAFold2
ProteinDesignLab/protpardelle
Diffusion-based all-atom protein generative model.
HWaymentSteele/AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
Genentech/equifold
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
JeffSHF/ColabDock
Code for ColabDock paper
THUNLP-MT/dyMEAN
This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
deepmodeling/Uni-Fold
HKUNLP/RSA
Retrieved Sequence Augmentation for Protein Representation Learning
Lyu6PosHao/ProLLaMA
A Protein Large Language Model for Multi-Task Protein Language Processing
BioinfoMachineLearning/MULTICOM3
The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was developed by the Bioinformatics and Machine Learning Lab at the University of Missouri. It was blindly tested in CASP15 and ranked among the best server predictors in 2022. It improves AlphaFold's accuracy by 5-10%.
Bitbol-Lab/Phylogeny-MSA-Transformer
Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
leklab/alphafoldv1
zqgao22/PromptMSP