Pinned Repositories
ark-analysis
Integrated pipeline for multiplexed image analysis
MAUI
GUI for low-level analysis of MIBI data
Nimbus
Nimbus-Inference
pixie
Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering
publications
Code from our publications
pyFlowSOM
Python implementation of the C-optimized FlowSOM library
SpaceCat
Generate a spatial catalogue from multiplexed imaging data
TNBC_python_scripts
toffy
Scripts for interacting with and generating data from the commercial MIBIScope
angelolab's Repositories
angelolab/ark-analysis
Integrated pipeline for multiplexed image analysis
angelolab/Nimbus
angelolab/Nimbus-Inference
angelolab/toffy
Scripts for interacting with and generating data from the commercial MIBIScope
angelolab/pixie
Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering
angelolab/MAUI
GUI for low-level analysis of MIBI data
angelolab/SpaceCat
Generate a spatial catalogue from multiplexed imaging data
angelolab/TNBC_python_scripts
angelolab/AMP
Augmentable MIBI Pipeline
angelolab/maldi-tools
Tools for extracting MALDI TIMS TOF 2 Data
angelolab/publications
Code from our publications
angelolab/pyFlowSOM
Python implementation of the C-optimized FlowSOM library
angelolab/tonic-vitessce
TONIC Vitessce Visualizations
angelolab/alpineer
Toolbox for Multiplexed Imaging
angelolab/FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
angelolab/mibi-bin-tools
Tools for extracting TIFF images from mibiscope bin files
angelolab/MIBIsualization
Visualization tools for MIBItiff data.
angelolab/.github
Default community health files
angelolab/MIBIAnalysis
Low level analysis for MIBI images
angelolab/MibiPipeline
Original scripts for analyzing segmented MIBI data
angelolab/pyimzML
A parser to read .imzML files with python
angelolab/TNBC
Original scripts for Keren et al. 2018 Cell paper