ViCTree is a bioinformatics framework that automatically selects new candidate virus sequences from GenBank, generates multiple sequence alignments, calculates a maximum likelihood phylogeny and, is capable of automatically building new phylogenies when new data is available on GenBank.
For documentation please visit ViCTree website: http://bioinformatics.cvr.ac.uk/victree_web/
You can also find the documentation here.
An instance of the visualisation component of the framework is available at http://www.bioinformatics.cvr.ac.uk/ViCTree