This tutorial will guide a new user through the process of setting up a simulation system containing a symmetric multi-component lipid bilayer membrane in a box of water. This workflow has been employed in Enthalpic and Entropic Contributions to Interleaflet Coupling Drive Domain Registration and Anti-registration in Biological Membrane
This tutorial assumes you are using a GROMACS version in the 2018.x series.
@article{sharma2021enthalpic,
title={Enthalpic and Entropic Contributions to Interleaflet Coupling Drive Domain Registration and Anti-registration in Biological Membrane},
author={Sharma, Akshara and Seal, Aniruddha and Iyer, Sahithya S and Srivastava, Anand},
journal={bioRxiv},
year={2021},
publisher={Cold Spring Harbor Laboratory}
}
Please note that the purpose of this tutorial is instructional and is not an endorsement or suggestion that you use these specific parameters/procedure for your simulation.
If you have suggestions for improving this tutorial, if you notice a mistake, or if anything is otherwise unclear, please feel free to email me. Please note: this is not an invitation to email me for CHARMM-GUI, GROMACS or Membrane Biophysics problems. I do not advertise myself as a private tutor or personal help service.