/median-motif-search

Median Motif Search using Hadoop Map Reduce

Primary LanguageJava

Median Motif String Search using Map Reduce

Prerequisites

Maven, Java

Compile and package

mvn clean package

Arguments

  • Path to DNA sequences input file
  • Temporary path for intermediate files
  • Output path for final destination files
  • (Optional) Motif Length. Default is 8.

Run as

haddop jar target/median-motif-search-1.0-SNAPSHOT.jar MedianStringMotifSearchMapReduce /input/path/hdfs/ /tmp/path/hdfs/ output/path/hdfs <motif length>