Pinned Repositories
epideMidd
CS701
evosoft
fastq_to_bam_interleaved_snakemake
A snakemake to convert interleaved fastq files to analysis-ready bams, following GATK best practices.
fastq_to_bam_paired_snakemake
A snakemake to convert paired fastq files to analysis-ready bams, following GATK best practices.
how_to_write_a_snakemake
ichorCNA_offtarget
Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.
mutect2_snakemake
A snakemake to run Mutect2 on analysis-ready bams, following GATK best practices.
SV_10X_analysis
Structural variation analysis of 10X Genomics linked-read data
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
annahoge's Repositories
annahoge/fastq_to_bam_paired_snakemake
A snakemake to convert paired fastq files to analysis-ready bams, following GATK best practices.
annahoge/epideMidd
CS701
annahoge/evosoft
annahoge/fastq_to_bam_interleaved_snakemake
A snakemake to convert interleaved fastq files to analysis-ready bams, following GATK best practices.
annahoge/how_to_write_a_snakemake
annahoge/ichorCNA_offtarget
Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.
annahoge/mutect2_snakemake
A snakemake to run Mutect2 on analysis-ready bams, following GATK best practices.
annahoge/SV_10X_analysis
Structural variation analysis of 10X Genomics linked-read data
annahoge/TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer