annajbott

Computational biologist

Oxford

Pinned Repositories

AMO-CFZ_RNA-Seq
SABS short rotation project 2. Using R studio to analyse RNA-Seq data. AMO-CFZ resistant cells treated with 4 compounds + control, 6hr and 24 time points(30 samples)
Language:R0 1 00
BUS_notebooks_python
Language:Jupyter Notebook0 0 00
LanceOtron
Language:Python0 0 00
MM_classifier
Multiple myeloma whole bone marrow niche cell type classifiers (scRNA-seq).
Language:R0 1 00
sc_simulate
Splatter and minnow to make simulated dscRNA-seq count mats and reads
Language:R1 2 01
Short-Project-1
Language:Python1 1 00
viral_track
Pipeline for programme viral track
Language:R1 3 10
asap_reproducibility
Reproducing all analyses and figures for the ASAP-seq paper
Language:Jupyter Notebook29 2 710
deepTools
Tools to process and analyze deep sequencing data.
Language:Python691 43 947212
LanceOtron
Language:Python23 2 195

annajbott's Repositories

annajbott/sc_simulate
Splatter and minnow to make simulated dscRNA-seq count mats and reads
Language:R1 2 01
annajbott/Short-Project-1
Language:Python1 1 00
annajbott/viral_track
Pipeline for programme viral track
Language:R1 3 10
annajbott/AMO-CFZ_RNA-Seq
SABS short rotation project 2. Using R studio to analyse RNA-Seq data. AMO-CFZ resistant cells treated with 4 compounds + control, 6hr and 24 time points(30 samples)
Language:R0 1 00
annajbott/BUS_notebooks_python
Language:Jupyter Notebook0 0 00
annajbott/LanceOtron
Language:Python0 0 00
annajbott/MM_classifier
Multiple myeloma whole bone marrow niche cell type classifiers (scRNA-seq).
Language:R0 1 00