Pinned Repositories
breakfast
Software for detecting genomic structural variants from DNA sequencing data
cfdna-wgs-manuscript-code
Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
ctdna-prediction-manuscript
Source code for building the ctDNA% prediction models used in our manuscript "Utility of ctDNA in prognosticating CRPC treatment outcomes"
foxa1-utr-manuscript-code
Code used in our study "Frequent mutation of the FOXA1 untranslated region in prostate cancer"
muc-manuscript-code
Code used in our study "Plasma ctDNA is a tumor tissue surrogate and enables clinical-genomic stratification of metastatic bladder cancer"
mutation-viewer
A simple VCF file viewer written in Rust and Javascript using D3.js
mutato
Mutato is a toolkit for mutation analysis using DNA sequencing data
seqkit
Toolkit for manipulating FASTA and SAM files
annalam's Repositories
annalam/seqkit
Toolkit for manipulating FASTA and SAM files
annalam/cfdna-wgs-manuscript-code
Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
annalam/mutato
Mutato is a toolkit for mutation analysis using DNA sequencing data
annalam/breakfast
Software for detecting genomic structural variants from DNA sequencing data
annalam/muc-manuscript-code
Code used in our study "Plasma ctDNA is a tumor tissue surrogate and enables clinical-genomic stratification of metastatic bladder cancer"
annalam/ctdna-prediction-manuscript
Source code for building the ctDNA% prediction models used in our manuscript "Utility of ctDNA in prognosticating CRPC treatment outcomes"
annalam/foxa1-utr-manuscript-code
Code used in our study "Frequent mutation of the FOXA1 untranslated region in prostate cancer"
annalam/mutation-viewer
A simple VCF file viewer written in Rust and Javascript using D3.js