Pinned Repositories
actionsTest
Test for actions
anpefi.github.io
my personal website at
anpefi.source
Source files for the website in anpefi.github.io
Bison2012
Code and config files for the simulations performed in the 2012 Biol Cons paper: http://dx.doi.org/10.1016/j.biocon.2012.02.022
MIBM-Genomica-Marina
Repo (In Spanish) for the Master Course: Genomica Marina
msap
The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.
myconfigs
This is my personal collection of miscellaneous configuration files
Vilas_et_al.15
Scripts and parameter files for the simulation analyses showed in the paper: Vilas et al. (2015), http://dx.doi.org/10.1111/mec.13334
anpefi's Repositories
anpefi/anpefi.github.io
my personal website at
anpefi/msap
The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.
anpefi/myconfigs
This is my personal collection of miscellaneous configuration files
anpefi/actionsTest
Test for actions
anpefi/anpefi.source
Source files for the website in anpefi.github.io
anpefi/Bison2012
Code and config files for the simulations performed in the 2012 Biol Cons paper: http://dx.doi.org/10.1016/j.biocon.2012.02.022
anpefi/MIBM-Genomica-Marina
Repo (In Spanish) for the Master Course: Genomica Marina
anpefi/Vilas_et_al.15
Scripts and parameter files for the simulation analyses showed in the paper: Vilas et al. (2015), http://dx.doi.org/10.1111/mec.13334
anpefi/agalma-modules
My own collection of agalma modules. Agalma (https://bitbucket.org/caseywdunn/agalma) is a set of analysis pipelines for phylogenomic analyses developed by the Dunn Lab at Brown University.
anpefi/anpefiR
My personal collection of miscellaneous R functions wrapped in a package
anpefi/bioinf-python
Python for Bioinformatics
anpefi/datasciencecoursera
Repo for the Coursera's specialization on Data Science
anpefi/datasharing
The Leek group guide to data sharing
anpefi/ddp-w4-project
repo for the Peer-graded Assignment: Course Project: Shiny Application and Reproducible Pitch
anpefi/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
anpefi/getting-and-cleaning-data-course-project
anpefi/misc-R-tools
Repository for multiple and miscellaneous tools and scripts in R
anpefi/pandoc-templates
Templates for pandoc
anpefi/pNpS_sims
anpefi/quantiself
A lifelogging project
anpefi/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
anpefi/Rslides
Slideshows made with R/Slidify to be shared
anpefi/rtumopp
🦀 R interface to tumopp. This fork is my own copy to use igraph instead of igraphlite, as this was giving me installation problems
anpefi/sc-mtDNA
Reproducible reports for the paper entittled: Single-cell mtDNA heteroplasmy in colorectal cancer
anpefi/shinymanager
Simple and secure authentification mechanism for single shiny applications.
anpefi/slides-seminar-IBMsims
This is a slide presentation I give as a lab seminar about Individual Based Simulations in population genetics and Cancer (22/04/2016). Written in Markdown using reveal-ck framework
anpefi/tumopp
Tumor growth simulation in C++