Pinned Repositories
arcs
Scaffold genome sequence assemblies using 10x Genomics data
augustus
Augustus is an open source system for building and scoring statistical models designed to work with data sets that are too large to fit into memory
beagle-lib
(Unofficial fork of) A general purpose library for evaluating the likelihood of sequence evolution on trees
BlastGraph
CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
canu
A single molecule sequence assembler for genomes large and small.
cDNA_primer
Scripts for processing PacBio transcriptome (Iso-Seq) data
CLARI-TE
ltr-finder
Automatically exported from code.google.com/p/ltr-finder
ssr_finder
Find simple repeat sequences in the assembly genome and design proper primers for simple repeat sequences in 10 steps ssr_finder
answer19831020's Repositories
answer19831020/ssr_finder
Find simple repeat sequences in the assembly genome and design proper primers for simple repeat sequences in 10 steps ssr_finder
answer19831020/ltr-finder
Automatically exported from code.google.com/p/ltr-finder
answer19831020/arcs
Scaffold genome sequence assemblies using 10x Genomics data
answer19831020/CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
answer19831020/canu
A single molecule sequence assembler for genomes large and small.
answer19831020/cDNA_primer
Scripts for processing PacBio transcriptome (Iso-Seq) data
answer19831020/Comparative-Annotation-Toolkit
answer19831020/diamond
Accelerated BLAST compatible local sequence aligner.
answer19831020/EasyCodeML
answer19831020/flo
Same species annotation lift over pipeline.
answer19831020/galaxytools
Galaxy Tool wrappers
answer19831020/gatk
Official code repository for GATK versions 4 and up
answer19831020/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
answer19831020/genome-scripts
Genome Scripts used in fungal comparative genomics
answer19831020/HomBlocks
HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
answer19831020/HpcGridRunner.github.io
web documentation for HpcGridRunner
answer19831020/Irys-scaffolding
scripts to parse IrysView output
answer19831020/kaks-calculator
Automatically exported from code.google.com/p/kaks-calculator
answer19831020/maize_v4_TE_annotation
scripts and intermediate files used to annotate TEs in Jiao et al.
answer19831020/MARVEL
The MARVEL assembler
answer19831020/MECAT
MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
answer19831020/notepad-plus-plus
Notepad++ official repository
answer19831020/Orthograph
Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models
answer19831020/paraat
paraat2.0 code and files for creation of dockerfile
answer19831020/phenolyzer
phenotype-based prioritization of candidate genes for human diseases
answer19831020/PhylOligo
Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.
answer19831020/pilon
Pilon is an automated genome assembly improvement and variant detection tool
answer19831020/PopLDdecay
PopLDdecay: A new simple and efficient software for Linkage Disequilibrium Decay analysis based Variant Call Format
answer19831020/proovread
PacBio hybrid error correction through iterative short read consensus
answer19831020/TARGeT
Tree Analysis of Related Genes and Transposons