`antigen.gene` / `antigen.species` mix up for some human epitopes
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I've just updated an analysis to use the May 2024 release and noticed that there's a few entries for anti-human TCRs that appear to have the antigen.gene
and antigen.species
fields swapped around. There's just under 90 of them, from a handful of different sources - see switched-antigen-gene-species.txt.
(In double checking this I also noticed that sometimes a human protein name is used instead of the gene name in the antigen.gene
field, e.g. p53 instead of TP53 or NY-ESO-1 instead of CTAG1B. I'm not sure if it matters, but I guess it's worth maybe flagging for people who want to cross-reference between datasets by gene symbols.)
Yep, just spotted that too, sorry - got a bit distracted with Docker issues) It matters as some "self-antigens" become missing. Thanks for the fix!