Pinned Repositories
ahead_2021_datavis
ancestry-determination
ancestry
bedtools
A powerful toolset for genome arithmetic.
Bioinformatics-Tools
General scripts for dealing with sequencing files and data extraction
BIOMEDIN205
BIOMEDIN 205 Course syllabus and content
maize
scripts for maize projects: haplotype analysis and GWAS
OpenNotebooks
read-processing
Basic pipeline for read processing / alignment with read-based analyses (e.g. LASER PCA)
sherlock-notes
Notes and quick reference for Stanford's Sherlock cluster
slack_analytics
Plotting slack workspace emoji usage and other important stats
antmarge's Repositories
antmarge/maize
scripts for maize projects: haplotype analysis and GWAS
antmarge/slack_analytics
Plotting slack workspace emoji usage and other important stats
antmarge/OpenNotebooks
antmarge/ahead_2021_datavis
antmarge/ancestry-determination
ancestry
antmarge/bedtools
A powerful toolset for genome arithmetic.
antmarge/Bioinformatics-Tools
General scripts for dealing with sequencing files and data extraction
antmarge/BIOMEDIN205
BIOMEDIN 205 Course syllabus and content
antmarge/read-processing
Basic pipeline for read processing / alignment with read-based analyses (e.g. LASER PCA)
antmarge/sherlock-notes
Notes and quick reference for Stanford's Sherlock cluster
antmarge/checkVCF
Sanity check Variant Call Format (VCF) files.
antmarge/covid19
covid19 data exploration
antmarge/data_visualization
antmarge/galaxy_dev
antmarge/hermit-maven
A mavenized version of the HermiT DL reasoner
antmarge/metro
Perl script to clean/edit .diff files. For data sets without biological replicates
antmarge/mmlantonio.github.io
Interesting articles, pseudo-code, miscellaneous
antmarge/plotSampleMap
Plot a map of samples in R
antmarge/r4ds-courses
antmarge/reich_data
Annotation checks on reich data
antmarge/sequenceTools
antmarge/serology_testing
antmarge/UnfinishedScripts
Scripts that are unfinished and don't have a place in a pipeline