anttonalberdi
Associate Professor at The GLOBE Institute, University of Copenhagen, Denmark
Copenhagen, Denmark; Getaria, The Basque Country
Pinned Repositories
Alberdi_2019_MER
Supporting information of Alberdi A & Gilbert MTP (2019). A guide to the application of Hill numbers to DNA based diversity analyses.
beho_gwas
GWAS analysis of BeHo genomic data
completer
DAMMA
distillR
R package for distilling functional annotations of bacterial genomes and metagenomes
domesticat
DomestiCAT project repo
ENMhill
Analysis of Environmental Niche Modelling Projections Based on Hill Numbers
EvoGenOT
UCPH's EvoGenomics section's Opentrons protocol library
hilldiv
Integral analysis of diversity based on Hill numbers
holoflow
Bioinformatics pipeline for hologenomics data generation and analysis
anttonalberdi's Repositories
anttonalberdi/distillR
R package for distilling functional annotations of bacterial genomes and metagenomes
anttonalberdi/holoflow
Bioinformatics pipeline for hologenomics data generation and analysis
anttonalberdi/EvoGenOT
UCPH's EvoGenomics section's Opentrons protocol library
anttonalberdi/beho_gwas
GWAS analysis of BeHo genomic data
anttonalberdi/DAMMA
anttonalberdi/completer
anttonalberdi/domesticat
DomestiCAT project repo
anttonalberdi/figure_workshop_2021
Data, scripts and documentation of the scientific figure-making workshop
anttonalberdi/hilldiv2
Repository of hilldiv2
anttonalberdi/metadeep
Metabolic Dependence and Exchange Evaluation Platform
anttonalberdi/anttonalberdi.github.io
anttonalberdi/autoasv
Automatic pipeline for amplicon sequencing data processing
anttonalberdi/bamse
Bacterial amplicon sequencing processing pipeline
anttonalberdi/buffera
Buffer A tests
anttonalberdi/campylobacter_gsmn
Genome-scale metabolic network analyses of Campylobacter and associated bacteria
anttonalberdi/completeness_function_bias
Effect of completeness on the functional characterisation of MAGs
anttonalberdi/covid_lesson
anttonalberdi/CrossM
Genome-wide cross-mapping risk quantification across bacterial genome catalogues
anttonalberdi/ehi_preservation
anttonalberdi/fox_metatranscriptomics
Repository for the fox metatranscriptomic analysis
anttonalberdi/functional_diversity
anttonalberdi/goc_gene_expression
R pipeline for gene expression analysis of gut-on-a-chip data
anttonalberdi/gsmn_reconstruction
Genome-scale metabolic networks of Campylobacter and related bacteria
anttonalberdi/holo-omics.github.io
anttonalberdi/holofood_functional
Functional inference of HoloFood chicken metagenomics
anttonalberdi/microbial_trait_correction
anttonalberdi/microbiome_structure
anttonalberdi/panmapper
Metagenomic pangenome mapper
anttonalberdi/short_read_genome_assembly
Snakemake pipeline for short-read-based draft genome assembly
anttonalberdi/virulence_annotation
Virulence factor annotation for MAGs