Pinned Repositories
acts_as_tree
ActsAsTree plugin
algorithms
A library of algorithms and containers for Ruby.
bcms_s3
bible2opensong
bioruby
bioruby
bioruby-from-cvs
Bioruby import from CVS as of 23/6/2008
browsercms_s3
BrowserCMS: Humane Content Management for Rails
paperclippolymorph
This plugin when used in conjunction with the paperclip file attachment plugin allows you to attach more than one file to the model.
primehosting
Capistrano recipes for Primehosting deployment
antunderwood's Repositories
antunderwood/nf-core-bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
antunderwood/aunderwo.github.com
antunderwood/AMR
A free, open-source and independent R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods.
antunderwood/amr_prediction
antunderwood/ariba
Antimicrobial Resistance Identification By Assembly
antunderwood/assembly
antunderwood/bioconda-recipes
Conda recipes for the bioconda channel.
antunderwood/blog
antunderwood/bronchStart_data
antunderwood/bwa_and_binder
antunderwood/christmas
antunderwood/configs
Config files used to define parameters specific to compute environments at different Institutions
antunderwood/datafunk
Miscellaneous data manipulation tools
antunderwood/docs
antunderwood/fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
antunderwood/hAMRonization
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
antunderwood/hladownload
A tool for downloading HLA alleles, epitopes and frequencies
antunderwood/MLSTar
An easy way of MLSTyping your genomes in R.
antunderwood/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
antunderwood/multi-package-containers
Testing building mulled containers for multi-requirement tools.
antunderwood/pangolin
Resources for a lineage naming scheme for SARS-CoV-2/hCoV-2019
antunderwood/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
antunderwood/remove_blocks_from_aln
antunderwood/reproducible-research
A demonstration of how to work reproducibly using version control, containers, and a workflow manager.
antunderwood/RP-with-Attitude
antunderwood/sars-cov-2-data
antunderwood/sunshine_maximiser
antunderwood/test-datasets
Test data to be used for automated testing with the nf-core pipelines
antunderwood/tools
Python package with helper tools for the nf-core community.
antunderwood/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples