https://cellxgene.cziscience.com/collections/31937775-0602-4e52-a799-b6acdd2bac2e
The PROMT pipeline tutorial is available at
PROMT_tutorial.ipynb
in this repository.
Make sure to split the Anndata
object into different slices
import scanpy as sc
adata_full = sc.read_h5ad('path/to/adata.h5ad')
adata_donor_MsBrainAgingSpatialDonor_1 = adata_full[adata_full.obs.donor_id == 'MsBrainAgingSpatialDonor_1']