Data recovery tool for interrupted runs on MGISEQ-2000 (now DNBSEQ-G400)
Please refer to the our article for more information.
- Linux (tested on Ubuntu)
- GCC compiler with C++17 support
- zlib (
apt-get install zlib1g-dev)
Run build.sh script inside root folder
SaveReads program recovers sample files by placing fixed files into fixed directory inside current directory. It's important to check that there are no filenames clashes between samples files.
SaveReads accepts N+1 argument, where first argument is pool with reads from interrupted run, and next N arguments are standard samples files.
To simplify call to SaveReads we wrote SaveReads.py script. This file accepts pool with reads as its single argument. All files with _1.fq.gz ending from current folder will be taken as samples files.