Pinned Repositories
affbio
Affinity Propagation adapted for processing of biomolecular structures
alphafold2_vs_swissmodel
Data for the comparison of AlphaFold2 predictions with the SwissModel repository
AlumniClubFBB.github.io
bbb-recordings
Simple app to list recordings from the BBB server with several thousands recordings
bbb_tools
Small service scripts to ease the support of the BigBlueButton instance
cosm_scripts
Force field parameters and supplementary scripts for the "A coarse-grained model for DNA origami" paper by R. Reshetnikov, A. Stolyarova, A. Zalevsky et. al.
ep_latexexport
LaTeX Export for Etherpad Lite
IHMValidation
Validation software for integrative models deposited to PDB
peptogrid
PeptoGrid rescoring function for AutoDock Vina
structhunt
QBI Hackathon
aozalevsky's Repositories
aozalevsky/peptogrid
PeptoGrid rescoring function for AutoDock Vina
aozalevsky/structhunt
QBI Hackathon
aozalevsky/alphafold2_vs_swissmodel
Data for the comparison of AlphaFold2 predictions with the SwissModel repository
aozalevsky/bbb-recordings
Simple app to list recordings from the BBB server with several thousands recordings
aozalevsky/cosm_scripts
Force field parameters and supplementary scripts for the "A coarse-grained model for DNA origami" paper by R. Reshetnikov, A. Stolyarova, A. Zalevsky et. al.
aozalevsky/IHMValidation
Validation software for integrative models deposited to PDB
aozalevsky/affbio
Affinity Propagation adapted for processing of biomolecular structures
aozalevsky/AlumniClubFBB.github.io
aozalevsky/bbb_tools
Small service scripts to ease the support of the BigBlueButton instance
aozalevsky/ep_latexexport
LaTeX Export for Etherpad Lite
aozalevsky/ep_redminewiki
aozalevsky/GromacsWrapper
GromacsWrapper is a python package that wraps system calls to Gromacs tools into thin classes. This allows for fairly seamless integration of the gromacs tools into python scripts. This is generally superior to shell scripts because of python’s better error handling and superior data structures. It also allows for modularization and code re-use. In addition, commands, warnings and errors are logged to a file so that there exists a complete history of what has been done.
aozalevsky/gromit
Auxiliary tools for automated atomistic and coarse-grained molecular dynamics simulations using gromacs
aozalevsky/IHMValidation_2.0
Heavy rewrite of the original validation pipeline
aozalevsky/JabberDock
protein docking using a density-based descriptor for atoms charge and dynamics
aozalevsky/makarich
Makarich website sources
aozalevsky/MemProtMD
aozalevsky/peptogrid2
Updated version of the PeptoGrid rescoring function
aozalevsky/pmx
Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
aozalevsky/ProDy
A Python Package for Protein Dynamics Analysis
aozalevsky/python-ihm
Python package for handling IHM mmCIF and BinaryCIF files
aozalevsky/redmine_dmsf
Fork of svn repository for redmine_dmsf
aozalevsky/redmine_etherpad
Plugin for embedding etherpads in redmine wikis.
aozalevsky/university-domains-list
University Domains and Names Data List & API