apelonero-GladstoneInstitutes
Bioinformatician at the Gladstone Institutes and overall a pretty chill guy.
Gladstone Institutes (UCSF)San Francisco
Pinned Repositories
big-json-to-csv
bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
chromVAR-Differential-Tests-forArchr
Differential deviation and differential variability chromVAR functions for ArchR projects
Data-Science--Cheat-Sheet
Cheat Sheets
docker_bcl2fastq2
Dockerized bcl2fastq2
docker_BPNet
Dockerized BPNet, built from official CentOS 8 Docker image.
telo-FISH_image_analysis
An attempt at replacing MetaMorph microscopy and image analysis software functionality with open-source, automated solutions.
bulk_RNA_seq
RNA seq analysis using Bioconductor (analysis built on limma, edgeR)
genomics_preprocessing
scRNA_seq
scRNA seq analysis using Seurat V3
apelonero-GladstoneInstitutes's Repositories
apelonero-GladstoneInstitutes/chromVAR-Differential-Tests-forArchr
Differential deviation and differential variability chromVAR functions for ArchR projects
apelonero-GladstoneInstitutes/big-json-to-csv
apelonero-GladstoneInstitutes/bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
apelonero-GladstoneInstitutes/Data-Science--Cheat-Sheet
Cheat Sheets
apelonero-GladstoneInstitutes/docker_bcl2fastq2
Dockerized bcl2fastq2
apelonero-GladstoneInstitutes/docker_BPNet
Dockerized BPNet, built from official CentOS 8 Docker image.
apelonero-GladstoneInstitutes/telo-FISH_image_analysis
An attempt at replacing MetaMorph microscopy and image analysis software functionality with open-source, automated solutions.
apelonero-GladstoneInstitutes/dymo_cryo_label
apelonero-GladstoneInstitutes/MonkeyOnWynton
Helper scripts and documentation for Monkey on Wynton (RIP Rigel)
apelonero-GladstoneInstitutes/PSFP-Bioinformatics---Seurat-Example
Code and data to reproduce Seurat analysis demonstrated in-class
apelonero-GladstoneInstitutes/USF_MSHI_614_Final
This is where I learned R, so take this all with a pound of salt. If only you could see my private repos... here's a hint: no, you can't. ML Project in R working with a Diabetes Dataset from UCI ML Repo.
apelonero-GladstoneInstitutes/whatlang-rs
Natural language detection library for Rust. Try demo online: https://www.greyblake.com/whatlang/