Pinned Repositories
AGAT
Another Gff Analysis Toolkit
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Jellyfish
A fast multi-threaded k-mer counter
MECAT2
Minipolish
A tool for Racon polishing of miniasm assemblies
OrthoFinder
Phylogenetic orthology inference for comparative genomics
Python
All Algorithms implemented in Python
racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
aragornwubo's Repositories
aragornwubo/AGAT
Another Gff Analysis Toolkit
aragornwubo/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
aragornwubo/freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
aragornwubo/Jellyfish
A fast multi-threaded k-mer counter
aragornwubo/MECAT2
aragornwubo/Minipolish
A tool for Racon polishing of miniasm assemblies
aragornwubo/OrthoFinder
Phylogenetic orthology inference for comparative genomics
aragornwubo/Python
All Algorithms implemented in Python
aragornwubo/racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
aragornwubo/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
aragornwubo/TransDecoder
TransDecoder source
aragornwubo/GAG
Generates an NCBI .tbl file of annotations on a genome.
aragornwubo/Resequencing-3.0
aragornwubo/Software-installtion
aragornwubo/TE-search-tools
Python wrappers for programs that search for transposable elements