Pinned Repositories
araikes.github.io
brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
CCOD
Comprehensive Concussion Outcomes Database
COP-Data
dabestr
Data Analysis with Bootstrap Estimation in R
dataMeta
An R package to create and append a data dictionary for an R dataset
dipy
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Dissertation
Python, R, and CSV files used for my dissertation
dose_meta
Meta-analysis of dose and timing of stroke rehabilitation based on the SCOAR database
heudiconv
Flexible DICOM conversion into structured directory layouts
araikes's Repositories
araikes/araikes.github.io
araikes/brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
araikes/CCOD
Comprehensive Concussion Outcomes Database
araikes/COP-Data
araikes/dabestr
Data Analysis with Bootstrap Estimation in R
araikes/dataMeta
An R package to create and append a data dictionary for an R dataset
araikes/dipy
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
araikes/Dissertation
Python, R, and CSV files used for my dissertation
araikes/dose_meta
Meta-analysis of dose and timing of stroke rehabilitation based on the SCOAR database
araikes/heudiconv
Flexible DICOM conversion into structured directory layouts
araikes/micapipe
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
araikes/mrtrix3
MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
araikes/MRtrix3_connectome
Generate subject connectomes from raw image data and perform inter-subject connection density normalisation, using tools provided in the MRtrix3 software package.
araikes/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
araikes/neurodocker
Generate custom Docker images and minimize existing containers
araikes/OBI
Online Brain Intensive
araikes/pep4400.github.io
araikes/physiologic-complexity
araikes/qsiprep
Preprocessing and reconstruction of diffusion MRI
araikes/rocker-versioned2
araikes/scanlab
Software for use at the University of Arizona SCAN Lab
araikes/SCOAR
araikes/singularity-ants
Singularity recipes for singularity images containing ANTs (Advanced Normalization Tools).
araikes/sleepy-dti
araikes/TeamCoders_Event_Based_Model
The notebooks and course content for the upcoming Team Coders event.
araikes/xcpEngine
Official public repository for the XCP Engine
araikes/zotero-report-customizer