Repository for the 2023 NeuroScience Open Workshop.
The online version, published as a Jupyter book can be browsed here.
The notebooks rely on the now-2023 library.
If you want to follow the tutorial online, there is nothing to do, just go the jupyter book and run the interactive notebooks on Collab.
If you want to follow on your local machine, we strongly encourage you to build a virtual environment (for example with conda). You can then install the requirements:
$ conda env create -f environment.yml
$ conda activate now
$ pip install -r requirements.txt
$ pip install -r ./jupyter-book/requirements.txt| Morning | Afternoon | Section |
|---|---|---|
| 09:00-09:30 | 13:30-14:00 | Introduction and setup |
| 09:30-09:45 | 14:00-14:15 | Introduction to Git |
| 09:45-10:30 | 14:15-15:00 | Version your code with Git |
| 10:30-10:45 | 15:00-15:15 | Break |
| 10:45-11:00 | 15:15-15:30 | Introduction to DVC |
| 11:00-11:30 | 15:30-16:00 | Version code and data with DVC |
| 11:30-12:00 | 16:00-16:30 | Version your experiments as data pipelines |
Once your changes are done in the scripts (the src files) run at the root folder:
make
This command will recreate automatically the notebooks and clean the outputs.
You need to install the requirements:
$ pip install -r jupyter-book/requirements.txt
Then:
$ cd jupyter-book
$ make
The HTML files are then in jupyter-book/_build/html/.