/nk-models

Bayesian models used in CD56bright natural killer cells preferentially kill proliferating CD4+ T cells

Primary LanguageR

Bayesian models used in CD56bright natural killer cells preferentially kill proliferating CD4+ T cells, Discovery Immunology, 2(1), 2023, doi:10.1093/discim/kyad012.

Dependencies

The Nix package manager.

Alternatively, all packages listed in flake.nix.

Usage

  1. Run nix develop. This instantiates an ephemeral environment that contains all required packages.
  2. Run bash make.sh. This downloads processed data and performs statistical inference.

After execution, figures created inside the tmp subdirectory should reproduce those in the article.

License

The source code is licensed under the GNU General Public License v3.0.