arendsee

Data analyst, tool smith, language developer (he/him)

Regeneronmy shell

Pinned Repositories

bioinfo-utils
A gallimaufry of questionable shellscripts
Language:Shell2 2 01
csv2gff3
Convert a csv to a gff3
Language:Python20
cuda-gibbs-example
Implementation of a Gibbs-Metropolis sampling algorithm in CUDA
Language:Cuda2 2 03
lsystems
L-system generators and visualizers
Language:Haskell30 2 15
phylostratr
An R framework for phylostratigraphy
Language:R33 2 297
rhmmer
Simple R utilities for working with HMMER
Language:R16 3 52
rmonad
Pipelines you can compute on
Language:R70 7 160
synder
Trace intervals between genomes using a synteny map
Language:C++7 6 93
smof
Explore and analyze biological sequence data
Language:Python15 3 22
morloc
A typed, polyglot, functional language
Language:Haskell193 9 164

arendsee's Repositories

arendsee/rmonad
Pipelines you can compute on
Language:R70 7 160
arendsee/phylostratr
An R framework for phylostratigraphy
Language:R33 2 297
arendsee/lsystems
L-system generators and visualizers
Language:Haskell30 2 15
arendsee/rhmmer
Simple R utilities for working with HMMER
Language:R16 3 52
arendsee/parse-minecraft
Parse minecraft binaries
Language:Haskell20
arendsee/bondi-vim
Vim syntax highlighting for the bondi language
Language:Vim script1 2 0
arendsee/2023-12-11-mtu
Software Carpentry Workshop site for Michigan Technological University
Language:HTML
arendsee/c-practice
Practice scripts for C
Language:C2 0
arendsee/dotfiles
My personal configuration files
Language:Vim Script2 01
arendsee/fagin
Classify genes using a syntenic filter
Language:R5 23
arendsee/gold
Get prices for metals and currencies
Language:Python2 0
arendsee/goo
this is repo about goo
Language:Shell
arendsee/hasktree
A toy phylogenetics library in Haskell (for demo purposes)
Language:Haskell
arendsee/hdc-talk
Morloc talk at HDC2023
Language:Python1 0
arendsee/milrd-kraken
Test of milrd kraken pipeline
Language:Python
arendsee/otherGoo
Python Workshop repository
Language:Shell0 01
arendsee/paradocs
3 0
arendsee/performance-haskell
This is a sandbox for high-performance haskell
Language:Haskell2 0
arendsee/pgraphdb
A wrapper around the GraphDB REST interface
Language:Python2 0
arendsee/phylocursive
Phylogenetic algorithms using recursion schemes
Language:Haskell2 0
arendsee/primrosepy
The Primrose Path to Python Projects
Language:Python2 0
arendsee/regref
Like sed, but reads pattern and replacement expressions from columns in a table
Language:Python2 0
arendsee/rpalign
Align a sequence against an msa
Language:C++2 0
arendsee/safe-seqs
A Haskell package for safe biological sequences handling
Language:Haskell2 0
arendsee/SICP-2020
Language:Racket1 0
arendsee/solver-practice
Sandbox for playing with SAT and SMT solvers
Language:SMT2 0
arendsee/swig-practice
Move along, nothing to see here
Language:Makefile2 0
arendsee/taxizedb
Tools for Working with Taxonomic SQL Databases
Language:R0 0
arendsee/tessellate
A geometry and tiling library - all for fun for now
Language:Haskell2 0
arendsee/test-notebook
test test - this is only a test
2 0