Pinned Repositories
auth2
KBase authentication server MKII
bam_demultiplexer
catalog
A dynamic catalog of KBase functionality that can also build/deploy modules automatically
coexpression
cookiecutter-django
Cookiecutter Django is a framework for jumpstarting production-ready Django projects quickly.
DifferentialExpressionUtils
Module to upload/download/export differential expression object and other related processing
docker_containers
docs
📘 isabl guides and tutorials.
ExpressionUtils
Functions for uploading and downloading KBase expression files.
sample_project_template
arfathpasha's Repositories
arfathpasha/sample_project_template
arfathpasha/auth2
KBase authentication server MKII
arfathpasha/bam_demultiplexer
arfathpasha/cookiecutter-django
Cookiecutter Django is a framework for jumpstarting production-ready Django projects quickly.
arfathpasha/DifferentialExpressionUtils
Module to upload/download/export differential expression object and other related processing
arfathpasha/docker_containers
arfathpasha/docs
📘 isabl guides and tutorials.
arfathpasha/ExpressionUtils
Functions for uploading and downloading KBase expression files.
arfathpasha/gradleWebDemo
Demo of Gradle with Java, Travis and Coveralls
arfathpasha/InterProScan_SDK
This module contains the SDK wrap of the InterProScan annotation pipeline
arfathpasha/jars
Common Java jar files needed across KBase
arfathpasha/kb_ballgown
http://bioconductor.org/packages/release/bioc/html/ballgown.html
arfathpasha/kb_cufflinks
Wrapper for cufflinks package
arfathpasha/kb_cummerbund
arfathpasha/kb_sdk
Build and test new Apps for the KBase platorm
arfathpasha/kb_SPAdes
SPAdes wrapper
arfathpasha/kb_stringtie
Module for running the StringTie application (http://ccb.jhu.edu/software/stringtie/index.shtml)
arfathpasha/KBase_Process
KBase recurring checklists, workflows, standard operating procedures and such...
arfathpasha/KBaseRNASeq
arfathpasha/KBaseSearchEngine
arfathpasha/luna
Scripts for data processing
arfathpasha/narrative
arfathpasha/ReadsAlignmentUtils
arfathpasha/rucio
Rucio - Scientific Data Management
arfathpasha/single_cell_contaminants
Identifying contaminants in human single cell reads
arfathpasha/single_cell_pipeline
arfathpasha/SpeciesTreeBuilder
arfathpasha/workbench
A community shared resource of Python and R Notebooks that utilize the cBioPortal API for various analysis recipes
arfathpasha/workspace_deluxe
The Workspace Service (WSS) is primarily a language independent remote storage and retrieval system for KBase typed objects (TO) defined with the KBase Interface Description Language (KIDL).
arfathpasha/wsi-jupyter-viewer
Lightweight interactive viewer w/ annotation support for WSI within Jupyter notebook.