Pinned Repositories
bigkmeans
An implementation of Lloyd's kmeans clustering algorithm for data sets that contain many points.
Biofuck
Biofuck project provides an integrated environment in bioinformatics for the Brainfuck language.
cmedb
vaporware computational molecular evolution command line suite using small sqlite databases for input and output
drawtree
A project to visualize phylogenetic trees and related objects.
eigensoft
principal components population genetics analysis on linux
hmmus
Find the posterior decoding of a long sequence of observations.
hpc
hpc related notes and scripts
iterutils
python itertools recipes
khatrisvd
Recursively cluster using an eigenvector of the doubly centered matrix of squared correlation coefficients.
xgcode
A server for a collection of web-accessible python scripts.
argriffing's Repositories
argriffing/eigensoft
principal components population genetics analysis on linux
argriffing/iterutils
python itertools recipes
argriffing/arbtkf91
arbitrary precision tkf91 alignment
argriffing/scipy
Scipy main repository
argriffing/arb
C library for arbitrary-precision floating-point ball arithmetic
argriffing/asv
Airspeed Velocity: A simple Python benchmarking tool with web-based reporting
argriffing/ctmcaas
continuous time markov chains as a service
argriffing/cvxpy
A Python-embedded modeling language for convex optimization problems.
argriffing/dipy
Diffusion MR Imaging in Python
argriffing/em-dec-2013
maximum likelihood estimation for a model with missing data
argriffing/ete
ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of any type of hierarchical trees. This includes phylogenetic trees, clustering results and profile-based trees. It supports node annotation, programatic tree drawing, circular visualization, SVG, PNG and PDF image rendering, and more!
argriffing/flint2
FLINT (Fast Library for Number Theory)
argriffing/jsonctmctree
Computes conditional summaries of continuous-time Markov processes on trees.
argriffing/LinearOperators.jl
Linear Operators for Julia
argriffing/mapalign
Diffusion map based embedding and alignment
argriffing/matplotlib
matplotlib: plotting with Python
argriffing/MatrixDepot.jl
A Test Matrix Collection for Julia
argriffing/networkx
Official NetworkX source code repository.
argriffing/nhml3-unofficial
for polishing the interface of Galtier's computational molecular evolution package nhml3
argriffing/numpy
Numpy main repository
argriffing/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
argriffing/phyly
Phylogenetic CTMC functions in Arb
argriffing/pyoperators
Operators and solvers for high-performance computing.
argriffing/pypseudospectra
check something related to abstract linear operators
argriffing/repro-galtier-2004
How did they get these results? That's a difficult question because it's impossible to know.
argriffing/restricted-permutations
experimental
argriffing/sampledoc
argriffing/scikit-learn
scikit-learn: machine learning in Python
argriffing/statsmodels
Statsmodels: statistical modeling and econometrics in Python
argriffing/yasb
yet another scipy benchmark