armaneshaghi
Neuroscientist #CausalInference #MachineLearning #ArtificialIntelligence #MultipleSclerosis
University College LondonLondon, UK
Pinned Repositories
adv-r
Advanced R programming: a book
ANTs
Advanced Normalization Tools (ANTs)
antsCorticalThicknessExample
A dreaded sunny day / So I meet you at the cemetery gates / Keats and Yeats are on your side / While Wilde is on mine
DCMPy
Python module for longitudinal surface-based DCM of fMRI data
LesionFilling_example
A reproducible example on how to use ANTs' lesion filling program
nifti2jpg
Ranger's plugin to view MRI files without opening
nipype_concepts
Tutorial notebooks for Nipype
trained_models_MS_SuStaIn
Trained models for the MS SuStaIn paper
mindGlide
Brain Segmentation with MONAI and Dynamic Unet (nn-unet)
armaneshaghi's Repositories
armaneshaghi/LesionFilling_example
A reproducible example on how to use ANTs' lesion filling program
armaneshaghi/nifti2jpg
Ranger's plugin to view MRI files without opening
armaneshaghi/ANTs
Advanced Normalization Tools (ANTs)
armaneshaghi/ANTsR
...
armaneshaghi/armaneshaghi.github.io
🍎Jalpc -- A flexible Jekyll theme, 3 steps to build your website.
armaneshaghi/atropos_failure
Reproducible example for DGM segmentation failures with Atropos/antsCorticalThickness.sh or any prior-based segmentation
armaneshaghi/awesome-courses
List of awesome university courses for learning Computer Science!
armaneshaghi/BayesLMMTutorial
Tutorial files to accompany Sorensen, Hohenstein, and Vasishth paper: http://www.ling.uni-potsdam.de/~vasishth/statistics/BayesLMMs.html
armaneshaghi/cascade
event based analysis of neuroimaging data
armaneshaghi/cp
A collection of pipelines for the CellProfiler cell image analysis software.
armaneshaghi/dotvim
Vimconfig
armaneshaghi/ESAC-stats-2014
Material for my lectures at the ESAC statistics conference, Oct 27-31 2014
armaneshaghi/fMRIANTs
Minimal fMRI pre-processing with ANTS
armaneshaghi/freesurfer
recon-all from FreeSurfer
armaneshaghi/FS_Bayesian_segmentation
Freesurfer
armaneshaghi/Hybrid-Fortran
Performance Portable Parallel Programming - Target CUDA and OpenMP in a Unified Codebase
armaneshaghi/ITK
Insight Segmentation and Registration Toolkit -- Mirror
armaneshaghi/Medical-Image-Analysis-IPython-Tutorials
armaneshaghi/MRI-contrast
Deep learning algorithm to automate brain MRI contrast identification process
armaneshaghi/NeuroBattery
Using ANTs to process multiple MR image types for a single subject
armaneshaghi/neurohackweek.github.io
armaneshaghi/nipype
Workflows and interfaces for neuroimaging packages
armaneshaghi/nmo_mvpa
NMO MVPA project
armaneshaghi/openmc
OpenMC Monte Carlo Code
armaneshaghi/pyunc
Python classes for reading the UNC MRI image format
armaneshaghi/qsms_computing_class
Teaching material for the QS MS Centre computing course
armaneshaghi/quickshear
Quickshear Defacing for Neuroimages
armaneshaghi/RANDOM
Random assignments
armaneshaghi/Slicer
Multi-platform, free open source software for visualization and image computing.
armaneshaghi/workbench
Connectome Workbench