armenabnousi
Postdoc at Cleveland Clinic; PhD in Computer Science; MBA candidate; Interested in machine learning, data science, big data processing, and bioinformatics.
Washington State UniversityPullman, Washington
Pinned Repositories
minhash_clustering
Clustering of protein conserved regions using minHashing (MRMPI code)
union_find
Union-Find algorithm, computation of connected components of a given network
sequence_alignment
Local/Global sequence alignment for DNA/protein sequences (SW - NW algorihtms with affine gap penalty)
HiC_data_generator
tensorflow.keras data generator/augmentator for HiC data from HICCUPS looplist
smartr
Stock MARket Trade Recommender
gender_classifier
Classify sex using images with transfer learning from VGG-Face
virtual4c
R script for creating vritual 4C plot for a given viewpoint from a bedpe file
bedpe2tabix
simple R script for converting bedpe format to tabix for visualization in WashU Epigenome Browser
fasta_util
utility functions for working with fasta files (read, write, name to numberID conversion, read function consistent with mrmpi library requirements)
FitHiChIP
Statistically Significant loops from HiChIP data
armenabnousi's Repositories
armenabnousi/lab_webpage_template
simple django based template for lab/personal webpages
armenabnousi/noaa
armenabnousi/MAPS
armenabnousi/gender_classifier
Classify sex using images with transfer learning from VGG-Face
armenabnousi/smartr
Stock MARket Trade Recommender
armenabnousi/HiC_data_generator
tensorflow.keras data generator/augmentator for HiC data from HICCUPS looplist
armenabnousi/multiHiCcompare
armenabnousi/FitHiChIP
Statistically Significant loops from HiChIP data
armenabnousi/mandy
differential interaction calling for HiChIP/PLACseq data
armenabnousi/virtual4c
R script for creating vritual 4C plot for a given viewpoint from a bedpe file
armenabnousi/bedpe2tabix
simple R script for converting bedpe format to tabix for visualization in WashU Epigenome Browser
armenabnousi/ucsc_genome_browser_file_hosting
I keep the files that need to be web-accessed by UCSC genome browser to be displayed here
armenabnousi/naddaR
R package for NADDA using pbdMPI for parallelization
armenabnousi/minhash_clustering
Clustering of protein conserved regions using minHashing (MRMPI code)
armenabnousi/union_find
Union-Find algorithm, computation of connected components of a given network
armenabnousi/mrmpi_util
utility functions for mrmpi library
armenabnousi/sequence_alignment
Local/Global sequence alignment for DNA/protein sequences (SW - NW algorihtms with affine gap penalty)
armenabnousi/mpi_util
utility functions for working with MPI (e.g. gathering/broadcasting string containers)
armenabnousi/fasta_util
utility functions for working with fasta files (read, write, name to numberID conversion, read function consistent with mrmpi library requirements)
armenabnousi/nadda
Non-Alignment Domain Detection Algorithm for protein sequences