arontommi

Pinned Repositories

AOC2021
Language:Python0 2 00
autocomplete
Fig adds autocomplete to your terminal.
Language:TypeScript0 1 00
cbioportal-frontend
React Frontend of cBioPortal :tada:
Language:TypeScript0 1 00
cyvcf2
cython + htslib == fast VCF and BCF processing
Language:Python0 1 00
demultiplex
Language:Python0 1 00
FindSV
Structural variant pipeline
Language:Python0 1 00
flair
Full-Length Alternative Isoform analysis of RNA
Language:Python0 1 00
IgCaller
Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from whole-genome sequencing in lymphoid neoplasms.
Language:Python0 1 00
RNAseq-VAX
A Nextflow pipeline for allele variant expression
Language:Groovy3 1 30
VCFlat
flatten Variant Call Format(VCF)
Language:Python3 1 11

arontommi's Repositories

arontommi/RNAseq-VAX
A Nextflow pipeline for allele variant expression
Language:Groovy3 1 30
arontommi/VCFlat
flatten Variant Call Format(VCF)
Language:Python3 1 11
arontommi/AOC2021
Language:Python0 2 00
arontommi/autocomplete
Fig adds autocomplete to your terminal.
Language:TypeScript0 1 00
arontommi/cbioportal-frontend
React Frontend of cBioPortal :tada:
Language:TypeScript0 1 00
arontommi/cyvcf2
cython + htslib == fast VCF and BCF processing
Language:Python0 1 00
arontommi/demultiplex
Language:Python0 1 00
arontommi/FindSV
Structural variant pipeline
Language:Python0 1 00
arontommi/flair
Full-Length Alternative Isoform analysis of RNA
Language:Python0 1 00
arontommi/IgCaller
Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from whole-genome sequencing in lymphoid neoplasms.
Language:Python0 1 00
arontommi/juncBASE
Junction Based Analysis of Splicing Events for RNA-Seq
Language:Python1 0
arontommi/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow1 0
arontommi/nanoseq
UNDER CONSTRUCTION: Nanopore demultiplexing, QC and alignment pipeline
Language:Nextflow1 0
arontommi/nf-mixcr
Language:Nextflow1 0
arontommi/NGSCheckMate
Software program for checking sample matching for NGS data
Language:Python1 0
arontommi/NirvanaParse
Language:Python1 0
arontommi/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
Language:Nextflow1 0
arontommi/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language:Nextflow0 0
arontommi/SarekCLLPostProcess
Process StrelkaBP results from Sarek
Language:Nextflow1 0
arontommi/SarGet
Test repository for NextFlow Haloplex analysis pipeline
Language:Nextflow1 0
arontommi/smallerbams
Language:Dockerfile1 0
arontommi/SVDB
structural variant database software
Language:Python1 0
arontommi/svimmer
Structural variant merging tool
Language:Python1 0
arontommi/UMI2Header
Language:Python1 0
arontommi/vimium
The hacker's browser.
Language:JavaScript1 0