Pinned Repositories
2012-11-scripps
Software Carpentry repository for Scripps, Nov 15-16 2012
AdvancedHeatmapTutorial
for YouTube Channel
arsheed
ATAC-seq
atac-seq-pipeline
ENCODE ATAC-seq pipeline
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
ataqv
A toolkit for QC and visualization of ATAC-seq results.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
seurat
R toolkit for single cell genomics
arsheedganaie's Repositories
arsheedganaie/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
arsheedganaie/ATAC-seq
arsheedganaie/atac-seq-pipeline
ENCODE ATAC-seq pipeline
arsheedganaie/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
arsheedganaie/ataqv
A toolkit for QC and visualization of ATAC-seq results.
arsheedganaie/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
arsheedganaie/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
arsheedganaie/BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
arsheedganaie/cbioportal
cBioPortal for Cancer Genomics
arsheedganaie/cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
arsheedganaie/Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
arsheedganaie/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
arsheedganaie/demo
arsheedganaie/gdc-docs
Official repository for GDC User Guides in Markdown format
arsheedganaie/github-slideshow
A robot powered training repository :robot:
arsheedganaie/hopr
This is the development site for Hands-On Programming with R, a book that teaches how to program in R, with hands-on examples. Read the book at https://rstudio-education.github.io/hopr.
arsheedganaie/jokergoo.github.io
personal website
arsheedganaie/msi-ipython-nb-ex
Example IPython notebooks for MSI
arsheedganaie/ngs-1
NGS Language Bindings
arsheedganaie/pilon
Pilon is an automated genome assembly improvement and variant detection tool
arsheedganaie/python-advanced-jupyter
arsheedganaie/scPipe
a pipeline for single cell RNA-seq data analysis
arsheedganaie/scRNA.seq.course
Analysis of single cell RNA-seq data course
arsheedganaie/scRNASeqPipeline
arsheedganaie/scSplit
Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
arsheedganaie/ShinyOmics
Exploration of Omics data
arsheedganaie/single_cell_portal_core
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
arsheedganaie/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
arsheedganaie/TCGAbiolinks
TCGAbiolinks
arsheedganaie/tutorial-dlframework
Step-by-step tutorial to improve understanding of common operators in Deep Learning frameworks.