artem-artemov/adrenal

Human adrenal gland paper

Human adrenal gland paper

Notebooks

• Whole dataset

  • Whole human dataset - 9 samples

• Adrenal medulla

  • Human adrenal medulla
  • RNA velocity
  • Genes specific to bridge population - deviation from linear mix

• Other fates

  • Adrenal cortex, endothelium, blood

• Mouse trunk dataset

  • Mouse: whole dataset, medulla, trajectories
  • RNA velocity

Download data

mkdir data/Seurat
wget -P data/Seurat/ http://pklab.med.harvard.edu/artem/adrenal/data/Seurat/adrenal.human.seurat.scrublet.rds
wget -P data/Seurat/ http://pklab.med.harvard.edu/artem/adrenal/data/Seurat/adrenal.mouse.seurat.rds

Alternatively, all preprocessed data including h5 files (read counts from cellranger) can be downloaded from GEO:

• Human: GSE147821 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE147821
• Mouse: GSE166262 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166262