Pinned Repositories
academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
arunhpatil.github.io
brooklyn
Brooklyn plot for single cell/nuclei RNA sequencing data. This package enables a Pearson pairwise (ie., many to many) gene comparison and outputs co-expression patterns of genes across the genome. It generates a Brooklyn plot for visualization. More about this in the documentation below.
CatGenEx
CatGenEx - Categorization of Gene (based on) Expression
GUI
GUI accessories
miRge
miRge - microRNA alignment software for small RNA-seq data, now at v2.0
miRge3_build
Enables building small-RNA libraries for organism of choice to use in miRge3.0 pipeline
PTM-Pro
PTM-Pro: Post translational modifications - profiling
miRge3.0
Comprehensive analysis of small RNA sequencing data
incubator
Where all ideas and discussions happen to lead to new repositories
arunhpatil's Repositories
arunhpatil/CatGenEx
CatGenEx - Categorization of Gene (based on) Expression
arunhpatil/miRge
miRge - microRNA alignment software for small RNA-seq data, now at v2.0
arunhpatil/PTM-Pro
PTM-Pro: Post translational modifications - profiling
arunhpatil/academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
arunhpatil/arunhpatil.github.io
arunhpatil/BatchCor_TCGAisomiR
Repository to reproduce analyses from "On the Impact of Batch Effect Correction in TCGA IsomiR Expression Data".
arunhpatil/brooklyn
Brooklyn plot for single cell/nuclei RNA sequencing data. This package enables a Pearson pairwise (ie., many to many) gene comparison and outputs co-expression patterns of genes across the genome. It generates a Brooklyn plot for visualization. More about this in the documentation below.
arunhpatil/GUI
GUI accessories
arunhpatil/miRge3_build
Enables building small-RNA libraries for organism of choice to use in miRge3.0 pipeline
arunhpatil/bioconda-recipes
Conda recipes for the bioconda channel.
arunhpatil/chartjs-plugin-stacked100
This plugin for Chart.js that makes your bar chart to 100% stacked bar chart.
arunhpatil/Cis-mQTL-mapping-protocol-for-methylome
arunhpatil/ClinicalTrials
Python scripts to parse XML files from ClinicalTrials.gov
arunhpatil/cutadapt
Cutadapt removes adapter sequences from sequencing reads
arunhpatil/datasciencecoursera
arunhpatil/datasharing
The Leek group guide to data sharing
arunhpatil/g3viz
Lollipop-diagram to interactively visualize genetic mutations
arunhpatil/GenoART
GenoART: Genome Annotation and Refinement Tool
arunhpatil/GoogleScholar
Revised GoogleScholar-API from fredrike
arunhpatil/googlescholar-api
arunhpatil/HCA_Heart
This is the official repository for the Human Cell Atlas Heart project.
arunhpatil/iBAQ
Label free quantitation
arunhpatil/miRglmm
arunhpatil/mirna-eqtl-manuscript
arunhpatil/mirtop
command lines tool to annotate miRNAs with a standard mirna/isomir naming
arunhpatil/MultiProgressBar
Open source android library for different progress bar designs
arunhpatil/pgs-calc
Applying polygenic scores (PGS) on imputed genotypes
arunhpatil/sceasy
A package to help convert different single-cell data formats to each other
arunhpatil/Temporary_add_to_version_control
arunhpatil/testing
A repository that will be linked with RStudio