arunsethuraman
Computational evolutionary biologist, Associate Professor of Population Genetics at San Diego State University.
San Diego State UniversitySan Diego, CA
Pinned Repositories
biomi609spring2022
This repository contains curricular material, lecture notes, labs, assignments, exams, code, solutions from the Spring 2022 version of BIOMI 609 Computational Genomics and Bioinformatics offered at San Diego State University.
ConGen2021
This repository contains all input files, code for performing corrections for multiple testing in population genomics.
ConGen2022
ConGen2023
This repository contains tutorials developed for lectures by Dr. Arun Sethuraman at ConGen2023
dcoccinellae
harmoniapopgen
This repository contains all the files/scripts/code required to replicate analyses from Li et al., 2022, describing the population genomics of Harmonia axyridis across its global distribution.
ima2p
IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under the IM (Isolation with Migration) model.
InRelate
InRelate estimates pairwise genetic relatedness between individuals sampled from inbred populations using multilocus genotypes.
MigSelect
multiclust
Multinomial clustering of multi-allelic, multi-locus population genomic data to assign population structure.
arunsethuraman's Repositories
arunsethuraman/biomi609spring2022
This repository contains curricular material, lecture notes, labs, assignments, exams, code, solutions from the Spring 2022 version of BIOMI 609 Computational Genomics and Bioinformatics offered at San Diego State University.
arunsethuraman/ima2p
IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under the IM (Isolation with Migration) model.
arunsethuraman/ConGen2023
This repository contains tutorials developed for lectures by Dr. Arun Sethuraman at ConGen2023
arunsethuraman/InRelate
InRelate estimates pairwise genetic relatedness between individuals sampled from inbred populations using multilocus genotypes.
arunsethuraman/MigSelect
arunsethuraman/ConGen2021
This repository contains all input files, code for performing corrections for multiple testing in population genomics.
arunsethuraman/harmoniapopgen
This repository contains all the files/scripts/code required to replicate analyses from Li et al., 2022, describing the population genomics of Harmonia axyridis across its global distribution.
arunsethuraman/multiclust
Multinomial clustering of multi-allelic, multi-locus population genomic data to assign population structure.
arunsethuraman/ConGen2022
arunsethuraman/dcoccinellae
arunsethuraman/hconddrad
This repository contains scripts, input files, output files from all analyses associated with Sethuraman et al., 2023 "Go west: population genomics reveals unexpected population fluctuations and little gene flow in Western hemisphere populations of the predatory lady beetle, Hippodamia convergens"
arunsethuraman/HconMicrosatellites
arunsethuraman/IMgui
Front end, browser-based GUI for IMa2 software
arunsethuraman/InRelate-1
R software package to accurately estimate genetic relatedness while accounting for population structure
arunsethuraman/popgraphs
arunsethuraman/Sediminibacterium
arunsethuraman/sethuramanlab
Sethuraman Lab Website
arunsethuraman/shellscripts