arupgsh
Postdoctoral researcher at Norwegian Institute of Public Health (Folkehelseinstituttet).
@folkehelseinstituttetOslo
Pinned Repositories
2016-summer-workshop
ISCB DC Area Regional Student Group - Summer 2016 Workshop
2017-04-03-adv-r-progr-EMBL
Advanced R programming course at EMBL, 3-4 April 2017
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
affordabee
biolord
MyCutOff
MyCutOff is a web app for scraping product prices from leading Indian e-commerce websites and sending price drop alerts when the user-defined limit is reached. This application also has a public interface where all the scrapped products are listed with the most recent prices. This is a very old project developed using PHP and MySQL and will not work with the modern version of websites.
PubmedScripts
Python functions to curate data from NCBI and EUROPMC API.
Affordabee
https://bioinfonet.github.io/Affordabee/
ann
A repository for brainstorming and prototyping ideas related to the eLifeSprint project Annotate them all (https://sprint.elifesciences.org/annotate-them-all/)
Bedsect
BedSect web server source code repository.
arupgsh's Repositories
arupgsh/MyCutOff
MyCutOff is a web app for scraping product prices from leading Indian e-commerce websites and sending price drop alerts when the user-defined limit is reached. This application also has a public interface where all the scrapped products are listed with the most recent prices. This is a very old project developed using PHP and MySQL and will not work with the modern version of websites.
arupgsh/PubmedScripts
Python functions to curate data from NCBI and EUROPMC API.
arupgsh/biolord
arupgsh/amazon-genomics-cli
arupgsh/arupdev
Personal website usign Jekyll theme, migration from hugo.
arupgsh/arupgsh
arupgsh/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
arupgsh/biopython
Official git repository for Biopython (originally converted from CVS)
arupgsh/DMP-writing-workshop
Teaching material for DMP writing course
arupgsh/freecodecamp
arupgsh/funkyheatmap
Visualising data frames as funky heatmaps đź“Š
arupgsh/genTB_downloader
Download analysis results from https://gentb.hms.harvard.edu/
arupgsh/hdWGCNA
High dimensional weighted gene co-expression network analysis
arupgsh/heredity.github.io
Temporary website for heredity.bio
arupgsh/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
arupgsh/intel-models
Model Zoo for Intel® Architecture: contains Intel optimizations for running deep learning workloads on Intel® Xeon® Scalable processors
arupgsh/journal-metrics
A searchable interface for journal impact factor and other metrics
arupgsh/kickstart.nvim
A launch point for your personal nvim configuration
arupgsh/kraken2-env
arupgsh/leprae_lineage_caller_test
arupgsh/MultiPlanarUNet
Multi-Planar UNet for autonomous segmentation of 3D medical images
arupgsh/ncovstatus.live
A COVID-19 Dashboard created using Google Sheet and PHP
arupgsh/NGS_PreQC
arupgsh/OBiWoW-2024
Oslo Bioinformatics Workshop Week 2024
arupgsh/Rosalind_solutions
arupgsh/scrnadatasets
Collection scRNA datasets from NCBI GEO
arupgsh/single_cell_datasets
A searchable interface for Single cell datasets using Streamlit framework.
arupgsh/singularity-conda
A Singularity recipe that properly initialize a conda environment
arupgsh/swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.
arupgsh/UPXome-Demux
Demultiplex QIAseq UPXome FASTQ files.