arushivyas
Research Software Engineer/Machine Learning (Newborn Care Department) @FNNDSC
Boston Children's HospitalBoston
Pinned Repositories
airbnb_data_science_project
Airbnb Price/Availability Prediction
ATKearney_Capstone
ChRIS_ui
UI for ChRIS
ChRIS_ultron_backEnd
Backend for ChRIS
med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
mgz2imgslices
A simple Python utility which converts mgz files to readable formats like PNG/JPEG, separately for each label defined within it.
pfdo_med2image
Perform a med2image at multiple locations in a directory tree
pfdo_mgz2image
Perform a mgz2imgslices at multiple locations in a directory tree
pl-pfdorun_imgmagick
A ChRIS plug-in which provides special utility to run "imagemagick" Linux CLI programs using the pfdo_run utility.
pl-pfdorun_mriconvert
An app to run the mri_convert program of freesurfer on an entire directory structure.
arushivyas's Repositories
arushivyas/airbnb_data_science_project
Airbnb Price/Availability Prediction
arushivyas/ATKearney_Capstone
arushivyas/ChRIS_ui
UI for ChRIS
arushivyas/ChRIS_ultron_backEnd
Backend for ChRIS
arushivyas/med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
arushivyas/mgz2imgslices
A simple Python utility which converts mgz files to readable formats like PNG/JPEG, separately for each label defined within it.
arushivyas/pfdo_med2image
Perform a med2image at multiple locations in a directory tree
arushivyas/pfdo_mgz2image
Perform a mgz2imgslices at multiple locations in a directory tree
arushivyas/pl-pfdorun_imgmagick
A ChRIS plug-in which provides special utility to run "imagemagick" Linux CLI programs using the pfdo_run utility.
arushivyas/pl-pfdorun_mriconvert
An app to run the mri_convert program of freesurfer on an entire directory structure.
arushivyas/datasciencecoursera
Data Science sample repo for the Coursera Data Scetist's Toolbox Course
arushivyas/datasharing
The Leek group guide to data sharing - Forked Repository
arushivyas/Interview
Headstorm's collaborative, pull-request based technical interview challenges.
arushivyas/List-of-Projects
A list of all the projects that I've worked on at Boston Children's Hospital and their descriptions.
arushivyas/mgz2imagetree
A python utility that walks through the inputdir and fetches mgz files of multiple subjects, uses mgz2imgslices to filter the labels and create labelled directories containing png/jpeg slices for each subject in the outputdir.
arushivyas/mgz_converter_dataset
A small data set containing brain MRI images of .mgz type
arushivyas/pfdo
An application that provides the base functionality to use/demo the `pftree` callback usage.
arushivyas/pfdo_run
arushivyas/pl-dsdircopy
A simple ChRIS 'ds' app that copies the contents of the `input` directory to an `output` directory.
arushivyas/pl-med2img
A ChRIS DS plugin to convert from medical image data files to display-friendly formats (like png and jpg).
arushivyas/pl-medcon
A DS plugin to convert NIfTI to DICOM
arushivyas/pl-mgz2imageslices
A ChRIS plugin to convert `mgz` to `png` or `jpeg` which will also be useful in other project workflows
arushivyas/pl-mricnn
A 3D U-Net effective for Brain MRI segmentation
arushivyas/pl-pfdo_med2img
A ChRIS plugin that can recursively walk down a directory tree and perform a 'med2image' on files in each directory (optionally filtered by some simple expression). Results of each operation are saved in output tree that preserves the input directory structure.
arushivyas/pl-pfdo_mgz2img
ChRIS plugin that runs ``mgz2image`` at each path/file location in an input tree. The CLI space is the union of ``pfdo`` and ``mgz2image``.
arushivyas/pyimgconvert
arushivyas/R_test_2
Testing repository on OH server