asadprodhan
Laboratory Scientist, DPIRD. Adjunct Senior Lecturer, Murdoch University. Adjunct Research Fellow, University of Western Australia.
Department of Primary Industries and Regional DevelopmentPerth, Australia
Pinned Repositories
A-beginner-s-guide-to-Bioinformatics
A beginner’s guide to Bioinformatics
Automating-sample-labelling-after-Nanopore-sequencing
Average-Nucleotide-Identity-ANI-analysis
Average Nucleotide Identity (ANI) analysis
BioinfTutorials
Bioinf Tutorials
GPU-accelerated-guppy-basecalling
GPU-accelerated guppy basecalling and demultiplexing on Linux
How-to-download-the-metadata-of-all-publicly-available-genome-sequences-of-an-organism
How to download the metadata of all publicly available genome sequences of an organism?
How-to-filter-contigs-from-a-genome-assembly
How-to-manually-download-the-metadata-of-all-the-available-genomes-of-an-organism-in-NCBI
How to manually download the metadata of all the available genomes of an organism in NCBI?
How-to-run-Kraken2-on-HPC-using-Singularity-container-and-Nextflow
An intuitive tutorial on Kraken2 metagenomic analysis
sangerFlow
A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.
asadprodhan's Repositories
asadprodhan/GPU-accelerated-guppy-basecalling
GPU-accelerated guppy basecalling and demultiplexing on Linux
asadprodhan/sangerFlow
A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.
asadprodhan/Average-Nucleotide-Identity-ANI-analysis
Average Nucleotide Identity (ANI) analysis
asadprodhan/BioinfTutorials
Bioinf Tutorials
asadprodhan/How-to-download-the-metadata-of-all-publicly-available-genome-sequences-of-an-organism
How to download the metadata of all publicly available genome sequences of an organism?
asadprodhan/How-to-manually-download-the-metadata-of-all-the-available-genomes-of-an-organism-in-NCBI
How to manually download the metadata of all the available genomes of an organism in NCBI?
asadprodhan/2023_London_Calling_Poster
2023_London_Calling_Poster
asadprodhan/About-the-PATH
path vs PATH
asadprodhan/An-introduction-to-R-coding
An introduction to R coding
asadprodhan/asadprodhan
asadprodhan/asadprodhan.github.io
asadprodhan/Bacterial-phylogenetic-tree-reconstruction-using-UBCG-pipeline
Identifying pathogenic bacteria
asadprodhan/A-Guide-to-Automatically-Downloading-NCBI-SRA-Reads
A Guide to Automatically Downloading NCBI SRA Reads
asadprodhan/blastn
How to automatically download blastn database, run blastn, and extract blastn hit sequences?
asadprodhan/Dorado-basecalled-reads-improve-old-bacterial-genome-assembly
Dorado-basecalled reads improve old bacterial genome assembly
asadprodhan/Dorado_Basecalling
asadprodhan/Downloading_genomes_from_RefSeq
Downloading Genomes from RefSeq
asadprodhan/Gene_seq_extraction_from_multiple_genomes
How do I automate extracting multiple gene sequences from multiple genomes?
asadprodhan/How-to-download-all-the-available-genome-sequences-of-an-organism-automatically
How to download all the available genome sequences of an organism automatically?
asadprodhan/How-to-download-genomes-using-the-accession-number
How to download genomes using the accession number
asadprodhan/How_to_connect_to_Pawsey_nimbus_instance
Nimbus Instance
asadprodhan/How_to_download_genome_sequences_manually
How to download genome sequences manually?
asadprodhan/How_to_set_up_WSL
asadprodhan/Invited_talks
asadprodhan/Navigating_a_Linux_computer
Navigating a Linux computer
asadprodhan/phyloTree
Bayesian phylogenetic analysis
asadprodhan/phyloTreeHPC
phyloTreeHPC, an automated, reproducible, and scalable workflow for Bayesian phylogenetic analysis using a HPC cluster, Nextflow, and Singularity container
asadprodhan/Publishing_a_paper_by_Prof_Lambers
Publishing_a_paper_by_Prof_Lambers
asadprodhan/Setting-up-R-Studio
Setting up R Studio
asadprodhan/Writing-and-Publishing-Protocols-Using-GitHub
Writing and publishing a GitHub repository