Introduction to Bioinformatics Course final project
In this project we extracted different ebola-virus species genes.
and based on their distance matrices build some phylogenetic trees
at the end estimated when was the first ebola-virus back in time
- Extraction of ebola-virus species genes based on Marburg-virus genes (Global-Local Alignment).
- Calculating edit distance of every two Ebola Species for each gene and saving theme as .CSV files.
- UPGMA algorithm is also implemented for testing
Phylogeny tree based on following option:
- Distance matrices of Each gene
- Distance matrix of global alignment of genomes
- Combining gene trees (UPGMA and Neighbor Joining Algorithm were used)
- Adel Salimi
This project is licensed under the MIT License - see the LICENSE.txt file for details