Pinned Repositories
AutoRT
AutoRT: Peptide retention time prediction using deep learning
BCM
bcmproteomics
A python package that allows easy access to data from the BCM Proteomics database.
BCMRmd
biolccc-cli
CLI wrapper around pyteomics.biolccc
click
Python composable command line utility
ComplexHeatmap
Make Complex Heatmaps
COSMO
COSMO: COrrection of Sample Mislabeling by Omics
gpgrouper
in house grouping program for proteomics
asalt's Repositories
asalt/gpgrouper
in house grouping program for proteomics
asalt/BCM
asalt/bcmproteomics
A python package that allows easy access to data from the BCM Proteomics database.
asalt/BCMRmd
asalt/ComplexHeatmap
Make Complex Heatmaps
asalt/COSMO
COSMO: COrrection of Sample Mislabeling by Omics
asalt/dotfiles
My dotfiles/configs
asalt/iSPEC
R Shiny interface to proteomics data in iSPEC
asalt/just-proteomics
just various routines for managing and processing proteomics data
asalt/mokapot-analyses
The code for reproducing the results from "mokapot: Fast and flexible semi-supervised learning for peptide detection"
asalt/MSPCMonitor
asalt/MSPCRunner
asalt/MSPCRunnerDAG
DAGster pipeline for proteomics
asalt/ppinet
A Python package for biological network generation and analysis
asalt/qPick-proteomics
asalt/RefProtDB
asalt/RomicsProcessor
R package that provides a structured R object to store and analyze omics data
asalt/schedule
Python job scheduling for humans.
asalt/tackle
complex data analysis pipeline for bcmproteomics data
asalt/agi
asalt/batch_concat
Batch concatenator for pd 2.0 PSM files
asalt/bcm-cal
asalt/bcm-gsea
asalt/bcm-spectra
asalt/BLCAsubtyping
Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA
asalt/FragPipe
A cross-platform proteomics data analysis suite
asalt/llm
Access large language models from the command-line
asalt/projection
asalt/say
say things with spd-say
asalt/site-annotate
rollup psms to site level