Pinned Repositories
Atria
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
BamQC
Mapped QC analysis program
BIN
Blurry Video Frame Interpolation (CVPR20)
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
chloe
Cp-hap
Estimate the ratio of different directions of single copy in the chloroplast genome
davinci-resolve-linux
Setup Davinci Resolve on Linux an Fix Issues with Importing and Exporting Media
DeepSimulator
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
duplex_basecall
SnakeMake workflow to perform duplex baecall of r9.4.1 data
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
asan-emirsaleh's Repositories
asan-emirsaleh/Atria
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
asan-emirsaleh/BamQC
Mapped QC analysis program
asan-emirsaleh/BIN
Blurry Video Frame Interpolation (CVPR20)
asan-emirsaleh/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
asan-emirsaleh/chloe
asan-emirsaleh/Cp-hap
Estimate the ratio of different directions of single copy in the chloroplast genome
asan-emirsaleh/davinci-resolve-linux
Setup Davinci Resolve on Linux an Fix Issues with Importing and Exporting Media
asan-emirsaleh/DeepSimulator
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
asan-emirsaleh/duplex_basecall
SnakeMake workflow to perform duplex baecall of r9.4.1 data
asan-emirsaleh/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
asan-emirsaleh/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
asan-emirsaleh/gwas_problem
asan-emirsaleh/Jellyfish
A fast multi-threaded k-mer counter
asan-emirsaleh/LightGraphsExtras.jl
Additional functionality for LightGraphs.jl
asan-emirsaleh/masurca
asan-emirsaleh/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
asan-emirsaleh/MultiTrans
asan-emirsaleh/photo-locating
Locate your photos using embedded exif metadata
asan-emirsaleh/plastome-preprocessing
Plastome Data Preprocessing Framework for reliable comparative genomics.
asan-emirsaleh/plotsr
Tool to plot synteny and structural rearrangements between genomes
asan-emirsaleh/rnaquast
Quality assessment of de novo transcriptome assemblies from RNA-Seq data
asan-emirsaleh/rosalind-club
Bioinformatics Rosalind Problems solved by members of the Rosalind Club at Skoltech. 2022
asan-emirsaleh/scripts-on-Genomics
Scripts for some simple jobs in Bioinformatics.
asan-emirsaleh/sleuth
Differential analysis of RNA-Seq
asan-emirsaleh/SOAPdenovo-Trans
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
asan-emirsaleh/tabbed_txt_rows_filter
Script to filter rows in tabbed txt files such as logfiles or sequencing summary, by another tabbed txt
asan-emirsaleh/transabyss
de novo assembly of RNA-seq data using ABySS
asan-emirsaleh/vcf-annotator
Add biological annotations to variants in a given VCF file.
asan-emirsaleh/xmatchview
🗻 Visualization of genome/gene sequence synteny
asan-emirsaleh/Zotero2MD
A Python library to retrieve annotations and notes from Zotero and save them into Markdown files.