asangphukieo
PhD | Postdoc fellow at International Agency for Research on Cancer Researcher (IARC), Lyon, France
International Agency for Research on Cancer (IARC)Lyon, France
Pinned Repositories
Accucopy
Accucopy is a computational method that infers Allele-specific Copy Number alterations from low-coverage low-purity tumor sequencing Data.
ADAP-in-MZmine2
allele_freq_map
R script for visualising allele frequency on world map
allelefrequencies
📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
App-GC
Data preprocessing pipeline for GC- and GCxGC-MS raw data
Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
aws-gatk-recipe-nextflow-pipeline
BARMEN_Exome_capture
BenchmARking from Mobidic for Exome sequencing at Nucleotide scale
PhotoModGNN
Genome neighborhood network via Cytoscape.js
xDELFI
asangphukieo's Repositories
asangphukieo/xDELFI
asangphukieo/ADAP-in-MZmine2
asangphukieo/allelefrequencies
📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
asangphukieo/App-GC
Data preprocessing pipeline for GC- and GCxGC-MS raw data
asangphukieo/BARMEN_Exome_capture
BenchmARking from Mobidic for Exome sequencing at Nucleotide scale
asangphukieo/cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
asangphukieo/Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
asangphukieo/CMUTEAM_NF_pipeline
CMUTEAM pipeline based on Nextflow and Docker container
asangphukieo/DEEP-HLA
Upload test
asangphukieo/Exome_capture
asangphukieo/getGN
Script for getting gene neighborhoods in specified region
asangphukieo/Gut_microbiota_workshop_CMUTEAM_2022
asangphukieo/GWAS_workshop
asangphukieo/h3agwas-examples
asangphukieo/HERRA
R script for Heritability Estimation using a Regularized Regression Approach (HERRA)
asangphukieo/HLA_analyses_tutorial
A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"
asangphukieo/jvarkit
Java utilities for Bioinformatics
asangphukieo/linux_workshop_2023
Material for linux workshop 2023
asangphukieo/Linux_workshop_for_Bioinformatics
asangphukieo/NGS_workshop
asangphukieo/PhotoModGO
Multi-label classifier for predicting photosynthesis-related functions via genome neighborhood feature
asangphukieo/POAP_CMUTEAM
Modified version of POAP - Parallelized Open Babel & Autodock suite Pipeline
asangphukieo/pustular_skin_disease
asangphukieo/Remove_Hidden_Characters
Methods to remove special-hidden characters by unix commands
asangphukieo/sclust
Copy-number analysis and inference of subclonal populations in cancer genomes using Sclust
asangphukieo/TCGA_data_download
Tutorial to download raw genetic data of TCGA dataset from GDC data portal
asangphukieo/the-unix-workbench
:house_with_garden: A Book for Anyone to Get Started with Unix
asangphukieo/useful_script
collection of useful script
asangphukieo/vcf_scripts
scripts for processing vcf files
asangphukieo/w-Wessim2
A tool for in silico whole-exome sequencing.